Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TMEM165-209ENST00000514070 433 ntTSL 218.74■□□□□ 0.591e-7■■■□□ 18.4
SF3B1O75533 GPBP1-207ENST00000513732 463 ntTSL 36.26□□□□□ -1.411e-7■■■□□ 18.4
SF3B1O75533 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.991e-7■■■□□ 18.4
SF3B1O75533 SERBP1-208ENST00000493607 615 ntTSL 225.56■■□□□ 1.685e-9■■■□□ 18.3
SF3B1O75533 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.295e-9■■■□□ 18.3
SF3B1O75533 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.925e-9■■■□□ 18.3
SF3B1O75533 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.25e-9■■■□□ 18.3
SF3B1O75533 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.025e-9■■■□□ 18.3
SF3B1O75533 SERBP1-205ENST00000462814 624 ntTSL 25.38□□□□□ -1.555e-9■■■□□ 18.3
SF3B1O75533 SERBP1-206ENST00000484880 628 ntTSL 25.38□□□□□ -1.555e-9■■■□□ 18.3
SF3B1O75533 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.197e-6■■■□□ 18.3
SF3B1O75533 ATP6V1B2-206ENST00000523482 6907 ntTSL 26.29□□□□□ -1.47e-6■■■□□ 18.3
SF3B1O75533 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.36□□□□□ -0.112e-8■■■□□ 18.2
SF3B1O75533 NUP98-205ENST00000397007 3698 ntTSL 1 (best) BASIC11.4□□□□□ -0.582e-8■■■□□ 18.2
SF3B1O75533 NUP98-206ENST00000397013 939 ntTSL 58.86□□□□□ -0.992e-8■■■□□ 18.2
SF3B1O75533 NUP98-214ENST00000527104 705 ntTSL 38.36□□□□□ -1.072e-8■■■□□ 18.2
SF3B1O75533 SON-209ENST00000457208 765 ntTSL 37.78□□□□□ -1.162e-8■■■□□ 18.2
SF3B1O75533 SON-213ENST00000473102 575 ntTSL 57.67□□□□□ -1.182e-8■■■□□ 18.2
SF3B1O75533 SON-218ENST00000484294 500 ntTSL 57.67□□□□□ -1.182e-8■■■□□ 18.2
SF3B1O75533 SON-211ENST00000467616 676 ntTSL 55.45□□□□□ -1.542e-8■■■□□ 18.2
SF3B1O75533 NUP98-216ENST00000529379 536 ntTSL 34.76□□□□□ -1.652e-8■■■□□ 18.2
SF3B1O75533 RPRD1A-204ENST00000585953 2357 ntTSL 31.64□□□□□ -2.152e-8■■■□□ 18.2
SF3B1O75533 DDX5-209ENST00000578758 667 ntTSL 210.58□□□□□ -0.722e-6■■■□□ 18.2
SF3B1O75533 YWHAZ-221ENST00000523131 567 ntTSL 522.8■■□□□ 1.243e-6■■■□□ 18.2
SF3B1O75533 YWHAZ-208ENST00000418997 996 ntTSL 222.32■■□□□ 1.163e-6■■■□□ 18.2
SF3B1O75533 YWHAZ-223ENST00000523938 626 ntTSL 521.84■■□□□ 1.093e-6■■■□□ 18.2
SF3B1O75533 YWHAZ-210ENST00000437293 701 ntTSL 320.99■□□□□ 0.953e-6■■■□□ 18.2
SF3B1O75533 KMT5A-203ENST00000437502 901 ntTSL 512.77□□□□□ -0.373e-6■■■□□ 18.2
SF3B1O75533 KMT5A-208ENST00000485469 454 ntTSL 33.9□□□□□ -1.793e-6■■■□□ 18.2
SF3B1O75533 SRSF5-219ENST00000557460 939 ntTSL 59.25□□□□□ -0.939e-7■■■□□ 18.2
SF3B1O75533 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.122e-6■■■□□ 18.2
SF3B1O75533 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC13.08□□□□□ -0.322e-6■■■□□ 18.2
SF3B1O75533 SLC3A2-213ENST00000539458 565 ntTSL 518.8■□□□□ 0.62e-9■■■□□ 18.2
SF3B1O75533 SLC3A2-211ENST00000538084 741 ntTSL 316.28■□□□□ 0.22e-9■■■□□ 18.2
SF3B1O75533 WASH7P-201ENST00000488147 1351 ntBASIC14.17□□□□□ -0.144e-9■■■□□ 18.1
SF3B1O75533 PTP4A2-214ENST00000532289 610 ntTSL 321.67■■□□□ 1.069e-7■■■□□ 18.1
SF3B1O75533 PTP4A2-211ENST00000528840 456 ntTSL 212.58□□□□□ -0.49e-7■■■□□ 18.1
SF3B1O75533 PTP4A2-216ENST00000534796 900 ntTSL 311.79□□□□□ -0.529e-7■■■□□ 18.1
SF3B1O75533 PTP4A2-204ENST00000475464 366 ntTSL 311.32□□□□□ -0.69e-7■■■□□ 18.1
SF3B1O75533 PTP4A2-208ENST00000524384 663 ntTSL 59.1□□□□□ -0.959e-7■■■□□ 18.1
SF3B1O75533 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.682e-6■■■□□ 18.1
SF3B1O75533 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.052e-6■■■□□ 18.1
SF3B1O75533 RABGGTB-214ENST00000497648 1319 ntTSL 28.16□□□□□ -1.12e-6■■■□□ 18.1
SF3B1O75533 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.55□□□□□ -22e-6■■■□□ 18.1
SF3B1O75533 AFDN-210ENST00000423229 1807 ntTSL 1 (best)8.32□□□□□ -1.084e-6■■■□□ 18
SF3B1O75533 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.066e-6■■■□□ 18
SF3B1O75533 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.46■■□□□ 1.196e-6■■■□□ 18
SF3B1O75533 ZNF274-208ENST00000600704 467 ntTSL 421.77■■□□□ 1.076e-6■■■□□ 18
SF3B1O75533 GIGYF1-202ENST00000464111 656 ntTSL 321.2■□□□□ 0.986e-6■■■□□ 18
SF3B1O75533 ZNF274-204ENST00000594248 2156 ntTSL 219.11■□□□□ 0.656e-6■■■□□ 18
SF3B1O75533 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.28■□□□□ 0.366e-6■■■□□ 18
SF3B1O75533 ZNF274-207ENST00000597528 709 ntTSL 516.77■□□□□ 0.286e-6■■■□□ 18
SF3B1O75533 FADS3-206ENST00000527379 768 ntTSL 316.21■□□□□ 0.196e-6■■■□□ 18
SF3B1O75533 FADS3-208ENST00000529404 2379 ntTSL 215.64■□□□□ 0.096e-6■■■□□ 18
SF3B1O75533 FADS3-211ENST00000533676 5314 ntTSL 215.33■□□□□ 0.046e-6■■■□□ 18
SF3B1O75533 FADS3-203ENST00000525094 403 ntTSL 513.95□□□□□ -0.186e-6■■■□□ 18
SF3B1O75533 PDIA5-204ENST00000472319 395 ntTSL 57.88□□□□□ -1.156e-6■■■□□ 18
SF3B1O75533 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.945e-6■■■□□ 18
SF3B1O75533 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.035e-6■■■□□ 18
SF3B1O75533 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.115e-6■■■□□ 18
SF3B1O75533 MORF4L2-204ENST00000422355 562 ntTSL 210.57□□□□□ -0.721e-6■■■□□ 18
SF3B1O75533 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.921e-6■■■□□ 18
SF3B1O75533 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.961e-6■■■□□ 18
SF3B1O75533 MORF4L2-209ENST00000442614 869 ntTSL 28.52□□□□□ -1.051e-6■■■□□ 18
SF3B1O75533 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.091e-6■■■□□ 18
SF3B1O75533 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.111e-6■■■□□ 18
SF3B1O75533 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.111e-6■■■□□ 18
SF3B1O75533 MORF4L2-215ENST00000498064 451 ntTSL 27.9□□□□□ -1.141e-6■■■□□ 18
SF3B1O75533 MORF4L2-207ENST00000434230 899 ntTSL 26.87□□□□□ -1.311e-6■■■□□ 18
SF3B1O75533 MORF4L2-214ENST00000492116 582 ntTSL 25.83□□□□□ -1.481e-6■■■□□ 18
SF3B1O75533 MORF4L2-211ENST00000467755 370 ntTSL 1 (best)5.52□□□□□ -1.531e-6■■■□□ 18
SF3B1O75533 MORF4L2-202ENST00000418819 849 ntTSL 35.36□□□□□ -1.551e-6■■■□□ 18
SF3B1O75533 MORF4L2-212ENST00000474653 573 ntTSL 23.31□□□□□ -1.881e-6■■■□□ 18
SF3B1O75533 HSP90B1-202ENST00000540297 590 ntTSL 321.64■■□□□ 1.051e-10■■■□□ 18
SF3B1O75533 MIR3652-201ENST00000579335 131 ntBASIC19.86■□□□□ 0.771e-10■■■□□ 18
SF3B1O75533 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.56■□□□□ 0.721e-10■■■□□ 18
SF3B1O75533 HSP90B1-204ENST00000548622 839 ntTSL 219.14■□□□□ 0.651e-10■■■□□ 18
SF3B1O75533 HSP90B1-205ENST00000549334 581 ntTSL 419.02■□□□□ 0.641e-10■■■□□ 18
SF3B1O75533 RPS2-203ENST00000526586 878 ntTSL 210.41□□□□□ -0.741e-10■■■□□ 18
SF3B1O75533 LUC7L3-203ENST00000503728 783 ntTSL 52.91□□□□□ -1.941e-10■■■□□ 18
SF3B1O75533 LUC7L3-204ENST00000503798 663 ntTSL 32.28□□□□□ -2.041e-10■■■□□ 18
SF3B1O75533 LUC7L3-222ENST00000513969 419 ntTSL 30.87□□□□□ -2.271e-10■■■□□ 18
SF3B1O75533 P3H1-210ENST00000463465 897 ntTSL 323.2■■□□□ 1.34e-6■■■□□ 18
SF3B1O75533 FUS-211ENST00000568901 521 ntTSL 211.75□□□□□ -0.539e-14■■■□□ 17.9
SF3B1O75533 ATP5A1-208ENST00000589252 662 ntTSL 521.39■■□□□ 1.019e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-213ENST00000590406 756 ntTSL 321.39■■□□□ 1.019e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-210ENST00000589869 910 ntTSL 316.36■□□□□ 0.219e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-217ENST00000591981 565 ntTSL 416.05■□□□□ 0.169e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-214ENST00000590448 604 ntTSL 213.92□□□□□ -0.189e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-219ENST00000592989 553 ntTSL 511.43□□□□□ -0.589e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-212ENST00000590324 807 ntTSL 510.84□□□□□ -0.679e-7■■■□□ 17.9
SF3B1O75533 ATP5A1-203ENST00000585650 520 ntTSL 57.14□□□□□ -1.279e-7■■■□□ 17.9
SF3B1O75533 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.83■■■□□ 2.538e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-211ENST00000619337 545 ntTSL 425.67■■□□□ 1.78e-6■■■□□ 17.8
SF3B1O75533 MED24-208ENST00000479829 733 ntTSL 525.54■■□□□ 1.688e-6■■■□□ 17.8
SF3B1O75533 ATP6V1B2-202ENST00000519667 670 ntTSL 1 (best)23.39■■□□□ 1.348e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-206ENST00000612880 593 ntTSL 222.56■■□□□ 1.28e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-207ENST00000613853 563 ntTSL 422.29■■□□□ 1.168e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.94■□□□□ 0.948e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.28■□□□□ 0.848e-6■■■□□ 17.8
Retrieved 100 of 46,956 protein–RNA pairs in 3424.5 ms