Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
USP42Q9H9J4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USP42Q9H9J4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
USP42Q9H9J4 AC093787.1-201ENST00000450396 207 ntBASIC27.19■■□□□ 1.94
USP42Q9H9J4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC27.19■■□□□ 1.94
USP42Q9H9J4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC27.19■■□□□ 1.94
USP42Q9H9J4 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC27.19■■□□□ 1.94
USP42Q9H9J4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USP42Q9H9J4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP42Q9H9J4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.18■■□□□ 1.94
USP42Q9H9J4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP42Q9H9J4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC27.18■■□□□ 1.94
USP42Q9H9J4 OR10C1-204ENST00000622521 1039 ntBASIC27.18■■□□□ 1.94
USP42Q9H9J4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP42Q9H9J4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
USP42Q9H9J4 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
USP42Q9H9J4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
USP42Q9H9J4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP42Q9H9J4 RPS2P52-201ENST00000469610 820 ntBASIC27.17■■□□□ 1.94
USP42Q9H9J4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
USP42Q9H9J4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC27.17■■□□□ 1.94
USP42Q9H9J4 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC27.17■■□□□ 1.94
USP42Q9H9J4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
USP42Q9H9J4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP42Q9H9J4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USP42Q9H9J4 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.17■■□□□ 1.94
USP42Q9H9J4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
USP42Q9H9J4 AC098590.1-201ENST00000468126 897 ntBASIC27.16■■□□□ 1.94
USP42Q9H9J4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
USP42Q9H9J4 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USP42Q9H9J4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 RARRES2P4-201ENST00000514074 484 ntBASIC27.16■■□□□ 1.94
USP42Q9H9J4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 LINC01960-201ENST00000563759 1884 ntBASIC27.16■■□□□ 1.94
USP42Q9H9J4 AC016405.3-201ENST00000607710 860 ntBASIC27.16■■□□□ 1.94
USP42Q9H9J4 AC083880.1-201ENST00000608266 535 ntBASIC27.16■■□□□ 1.94
USP42Q9H9J4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC27.16■■□□□ 1.94
USP42Q9H9J4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
USP42Q9H9J4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
USP42Q9H9J4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
USP42Q9H9J4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
USP42Q9H9J4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
USP42Q9H9J4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC27.14■■□□□ 1.94
USP42Q9H9J4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
USP42Q9H9J4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
USP42Q9H9J4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
USP42Q9H9J4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
USP42Q9H9J4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
USP42Q9H9J4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
USP42Q9H9J4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC27.14■■□□□ 1.93
USP42Q9H9J4 AL512625.2-201ENST00000417533 625 ntBASIC27.14■■□□□ 1.93
USP42Q9H9J4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC27.14■■□□□ 1.93
USP42Q9H9J4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC27.14■■□□□ 1.93
USP42Q9H9J4 AC053503.5-201ENST00000601508 636 ntBASIC27.14■■□□□ 1.93
USP42Q9H9J4 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
USP42Q9H9J4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC27.13■■□□□ 1.93
USP42Q9H9J4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC27.13■■□□□ 1.93
USP42Q9H9J4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC27.13■■□□□ 1.93
USP42Q9H9J4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC27.13■■□□□ 1.93
USP42Q9H9J4 MYC-209ENST00000641252 345 ntBASIC27.13■■□□□ 1.93
USP42Q9H9J4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP42Q9H9J4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP42Q9H9J4 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
USP42Q9H9J4 AC012676.1-201ENST00000574705 1949 ntBASIC27.11■■□□□ 1.93
USP42Q9H9J4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC27.11■■□□□ 1.93
USP42Q9H9J4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms