Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP43Q70EL4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP43Q70EL4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP43Q70EL4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP43Q70EL4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP43Q70EL4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.24■□□□□ 0.67
USP43Q70EL4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.24■□□□□ 0.67
USP43Q70EL4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.24■□□□□ 0.67
USP43Q70EL4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.24■□□□□ 0.67
USP43Q70EL4 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.24■□□□□ 0.67
USP43Q70EL4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.24■□□□□ 0.67
USP43Q70EL4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.24■□□□□ 0.67
USP43Q70EL4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USP43Q70EL4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP43Q70EL4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
USP43Q70EL4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
USP43Q70EL4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.23■□□□□ 0.67
USP43Q70EL4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.23■□□□□ 0.67
USP43Q70EL4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.23■□□□□ 0.67
USP43Q70EL4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP43Q70EL4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.23■□□□□ 0.67
USP43Q70EL4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.22■□□□□ 0.67
USP43Q70EL4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
USP43Q70EL4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP43Q70EL4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.22■□□□□ 0.67
USP43Q70EL4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 AC011551.1-201ENST00000614101 683 ntBASIC19.22■□□□□ 0.67
USP43Q70EL4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
USP43Q70EL4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.22■□□□□ 0.67
USP43Q70EL4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP43Q70EL4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP43Q70EL4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
USP43Q70EL4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
USP43Q70EL4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.21■□□□□ 0.67
USP43Q70EL4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.21■□□□□ 0.67
USP43Q70EL4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.21■□□□□ 0.67
USP43Q70EL4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.21■□□□□ 0.67
USP43Q70EL4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.21■□□□□ 0.67
USP43Q70EL4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
USP43Q70EL4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
USP43Q70EL4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.21■□□□□ 0.67
USP43Q70EL4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.21■□□□□ 0.67
USP43Q70EL4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
USP43Q70EL4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP43Q70EL4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP43Q70EL4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP43Q70EL4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
USP43Q70EL4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.2■□□□□ 0.66
USP43Q70EL4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.2■□□□□ 0.66
USP43Q70EL4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP43Q70EL4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.2■□□□□ 0.66
USP43Q70EL4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms