Protein–RNA interactions for Protein: Q6NX49

ZNF544, Zinc finger protein 544, humanhuman

Predictions only

Length 715 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544Q6NX49 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 SERBP1P1-201ENST00000396021 1160 ntBASIC19.4■□□□□ 0.7
ZNF544Q6NX49 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.4■□□□□ 0.7
ZNF544Q6NX49 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF544Q6NX49 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
ZNF544Q6NX49 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF544Q6NX49 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF544Q6NX49 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF544Q6NX49 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.39■□□□□ 0.69
ZNF544Q6NX49 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF544Q6NX49 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 AC139530.1-201ENST00000575312 1977 ntBASIC19.38■□□□□ 0.69
ZNF544Q6NX49 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 AC009086.3-201ENST00000623486 1008 ntBASIC19.38■□□□□ 0.69
ZNF544Q6NX49 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF544Q6NX49 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 MIR4767-201ENST00000582827 78 ntBASIC19.37■□□□□ 0.69
ZNF544Q6NX49 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF544Q6NX49 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.36■□□□□ 0.69
ZNF544Q6NX49 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 MIR939-201ENST00000401314 82 ntBASIC19.35■□□□□ 0.69
ZNF544Q6NX49 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 AC091305.1-201ENST00000479476 895 ntBASIC19.35■□□□□ 0.69
ZNF544Q6NX49 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 AF213884.3-201ENST00000563833 479 ntBASIC19.35■□□□□ 0.69
ZNF544Q6NX49 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
ZNF544Q6NX49 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
ZNF544Q6NX49 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
ZNF544Q6NX49 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms