Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
PPP4R4Q6NUP7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PPP4R4Q6NUP7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PPP4R4Q6NUP7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.28■□□□□ 0.84
PPP4R4Q6NUP7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PPP4R4Q6NUP7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 AIRN-201ENST00000601203 4374 ntBASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.27■□□□□ 0.84
PPP4R4Q6NUP7 LINC01960-201ENST00000563759 1884 ntBASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PPP4R4Q6NUP7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 AC009102.2-201ENST00000606772 1639 ntBASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PPP4R4Q6NUP7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PPP4R4Q6NUP7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 AC096631.2-201ENST00000436136 790 ntBASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PPP4R4Q6NUP7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 RNF165-205ENST00000588679 2904 ntBASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PPP4R4Q6NUP7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms