Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AL591742.1-201ENST00000604433 565 ntBASIC23.71■■□□□ 1.39
NKX3-2P78367 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.71■■□□□ 1.39
NKX3-2P78367 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
NKX3-2P78367 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.7■■□□□ 1.38
NKX3-2P78367 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX3-2P78367 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX3-2P78367 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX3-2P78367 AC010980.2-201ENST00000587099 1412 ntBASIC23.69■■□□□ 1.38
NKX3-2P78367 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX3-2P78367 AC097658.1-201ENST00000475555 843 ntBASIC23.69■■□□□ 1.38
NKX3-2P78367 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.69■■□□□ 1.38
NKX3-2P78367 AC091874.3-201ENST00000512672 1195 ntBASIC23.69■■□□□ 1.38
NKX3-2P78367 RARRES2P4-201ENST00000514074 484 ntBASIC23.69■■□□□ 1.38
NKX3-2P78367 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
NKX3-2P78367 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.69■■□□□ 1.38
NKX3-2P78367 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.69■■□□□ 1.38
NKX3-2P78367 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX3-2P78367 AC087742.1-201ENST00000575880 1738 ntBASIC23.69■■□□□ 1.38
NKX3-2P78367 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.69■■□□□ 1.38
NKX3-2P78367 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
NKX3-2P78367 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NKX3-2P78367 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX3-2P78367 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.68■■□□□ 1.38
NKX3-2P78367 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.68■■□□□ 1.38
NKX3-2P78367 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NKX3-2P78367 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX3-2P78367 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX3-2P78367 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.68■■□□□ 1.38
NKX3-2P78367 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX3-2P78367 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
NKX3-2P78367 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.67■■□□□ 1.38
NKX3-2P78367 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.67■■□□□ 1.38
NKX3-2P78367 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.67■■□□□ 1.38
NKX3-2P78367 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.67■■□□□ 1.38
NKX3-2P78367 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX3-2P78367 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.66■■□□□ 1.38
NKX3-2P78367 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.66■■□□□ 1.38
NKX3-2P78367 AC098590.1-201ENST00000468126 897 ntBASIC23.66■■□□□ 1.38
NKX3-2P78367 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.66■■□□□ 1.38
NKX3-2P78367 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.66■■□□□ 1.38
NKX3-2P78367 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.66■■□□□ 1.38
NKX3-2P78367 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.66■■□□□ 1.38
NKX3-2P78367 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NKX3-2P78367 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.66■■□□□ 1.38
NKX3-2P78367 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
NKX3-2P78367 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX3-2P78367 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX3-2P78367 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX3-2P78367 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.65■■□□□ 1.38
NKX3-2P78367 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX3-2P78367 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.65■■□□□ 1.38
NKX3-2P78367 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX3-2P78367 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX3-2P78367 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX3-2P78367 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX3-2P78367 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.64■■□□□ 1.38
NKX3-2P78367 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.37
NKX3-2P78367 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.64■■□□□ 1.37
NKX3-2P78367 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.64■■□□□ 1.37
NKX3-2P78367 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.64■■□□□ 1.37
NKX3-2P78367 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.64■■□□□ 1.37
NKX3-2P78367 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.64■■□□□ 1.37
NKX3-2P78367 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.64■■□□□ 1.37
NKX3-2P78367 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX3-2P78367 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX3-2P78367 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX3-2P78367 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX3-2P78367 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.63■■□□□ 1.37
NKX3-2P78367 ESRRAP1-201ENST00000400596 1257 ntBASIC23.63■■□□□ 1.37
NKX3-2P78367 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
NKX3-2P78367 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 GCSHP5-201ENST00000443090 522 ntBASIC23.63■■□□□ 1.37
NKX3-2P78367 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NKX3-2P78367 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.63■■□□□ 1.37
NKX3-2P78367 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms