Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TNFRSF4P43489 MKRN4P-201ENST00000444706 1521 ntBASIC21.53■■□□□ 1.04
TNFRSF4P43489 KRT16P2-201ENST00000414673 1423 ntBASIC21.53■■□□□ 1.04
TNFRSF4P43489 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFRSF4P43489 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.52■■□□□ 1.04
TNFRSF4P43489 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.52■■□□□ 1.04
TNFRSF4P43489 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.52■■□□□ 1.04
TNFRSF4P43489 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 MIPEPP3-201ENST00000412105 444 ntBASIC21.52■■□□□ 1.04
TNFRSF4P43489 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.52■■□□□ 1.04
TNFRSF4P43489 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.52■■□□□ 1.04
TNFRSF4P43489 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.52■■□□□ 1.04
TNFRSF4P43489 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TNFRSF4P43489 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TNFRSF4P43489 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TNFRSF4P43489 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TNFRSF4P43489 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.51■■□□□ 1.03
TNFRSF4P43489 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TNFRSF4P43489 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.51■■□□□ 1.03
TNFRSF4P43489 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TNFRSF4P43489 AC093323.1-202ENST00000635031 2045 ntBASIC21.51■■□□□ 1.03
TNFRSF4P43489 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TNFRSF4P43489 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.51■■□□□ 1.03
TNFRSF4P43489 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.5■■□□□ 1.03
TNFRSF4P43489 AL162412.1-201ENST00000567129 965 ntBASIC21.5■■□□□ 1.03
TNFRSF4P43489 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.5■■□□□ 1.03
TNFRSF4P43489 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.5■■□□□ 1.03
TNFRSF4P43489 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.5■■□□□ 1.03
TNFRSF4P43489 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TNFRSF4P43489 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 AC098934.4-201ENST00000564127 592 ntBASIC21.49■■□□□ 1.03
TNFRSF4P43489 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.49■■□□□ 1.03
TNFRSF4P43489 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TNFRSF4P43489 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TNFRSF4P43489 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
TNFRSF4P43489 RBM17P2-201ENST00000616397 1405 ntBASIC21.48■■□□□ 1.03
TNFRSF4P43489 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.48■■□□□ 1.03
TNFRSF4P43489 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TNFRSF4P43489 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TNFRSF4P43489 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TNFRSF4P43489 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.48■■□□□ 1.03
TNFRSF4P43489 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.48■■□□□ 1.03
TNFRSF4P43489 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
TNFRSF4P43489 AL591742.1-201ENST00000604433 565 ntBASIC21.48■■□□□ 1.03
TNFRSF4P43489 AC243732.1-201ENST00000612648 864 ntBASIC21.48■■□□□ 1.03
TNFRSF4P43489 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TNFRSF4P43489 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TNFRSF4P43489 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TNFRSF4P43489 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TNFRSF4P43489 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TNFRSF4P43489 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.47■■□□□ 1.03
TNFRSF4P43489 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms