Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
SOX3P41225 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
SOX3P41225 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.95■□□□□ 0.78
SOX3P41225 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.95■□□□□ 0.78
SOX3P41225 TPRG1LP1-201ENST00000598702 760 ntBASIC19.95■□□□□ 0.78
SOX3P41225 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SOX3P41225 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 AC087742.1-201ENST00000575880 1738 ntBASIC19.95■□□□□ 0.78
SOX3P41225 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
SOX3P41225 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SOX3P41225 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SOX3P41225 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SOX3P41225 KRT18P14-201ENST00000534205 1250 ntBASIC19.94■□□□□ 0.78
SOX3P41225 TERF1P2-201ENST00000583350 1212 ntBASIC19.94■□□□□ 0.78
SOX3P41225 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.94■□□□□ 0.78
SOX3P41225 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SOX3P41225 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SOX3P41225 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SOX3P41225 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SOX3P41225 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.93■□□□□ 0.78
SOX3P41225 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.93■□□□□ 0.78
SOX3P41225 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SOX3P41225 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SOX3P41225 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.93■□□□□ 0.78
SOX3P41225 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SOX3P41225 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 AC080038.3-201ENST00000623346 1952 ntBASIC19.92■□□□□ 0.78
SOX3P41225 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.92■□□□□ 0.78
SOX3P41225 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.92■□□□□ 0.78
SOX3P41225 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SOX3P41225 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SOX3P41225 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SOX3P41225 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.91■□□□□ 0.78
SOX3P41225 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.91■□□□□ 0.78
SOX3P41225 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SOX3P41225 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.91■□□□□ 0.78
SOX3P41225 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SOX3P41225 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.91■□□□□ 0.78
SOX3P41225 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.91■□□□□ 0.78
SOX3P41225 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SOX3P41225 AC104564.3-201ENST00000582367 638 ntBASIC19.91■□□□□ 0.78
SOX3P41225 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SOX3P41225 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SOX3P41225 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SOX3P41225 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.9■□□□□ 0.78
SOX3P41225 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SOX3P41225 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.9■□□□□ 0.78
SOX3P41225 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.9■□□□□ 0.78
SOX3P41225 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.9■□□□□ 0.78
SOX3P41225 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.9■□□□□ 0.78
SOX3P41225 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.9■□□□□ 0.78
SOX3P41225 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms