Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.98■□□□□ 0.47
USF1P22415 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.98■□□□□ 0.47
USF1P22415 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
USF1P22415 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.98■□□□□ 0.47
USF1P22415 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.98■□□□□ 0.47
USF1P22415 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.98■□□□□ 0.47
USF1P22415 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.98■□□□□ 0.47
USF1P22415 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
USF1P22415 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USF1P22415 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.98■□□□□ 0.47
USF1P22415 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.97■□□□□ 0.47
USF1P22415 AC007322.1-201ENST00000426983 750 ntBASIC17.97■□□□□ 0.47
USF1P22415 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.97■□□□□ 0.47
USF1P22415 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.97■□□□□ 0.47
USF1P22415 AL121832.2-201ENST00000610979 668 ntBASIC17.97■□□□□ 0.47
USF1P22415 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
USF1P22415 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USF1P22415 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
USF1P22415 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.96■□□□□ 0.47
USF1P22415 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.96■□□□□ 0.47
USF1P22415 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
USF1P22415 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
USF1P22415 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 AC233723.2-201ENST00000623798 2106 ntBASIC17.96■□□□□ 0.47
USF1P22415 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.96■□□□□ 0.47
USF1P22415 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
USF1P22415 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USF1P22415 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USF1P22415 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
USF1P22415 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.95■□□□□ 0.46
USF1P22415 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.95■□□□□ 0.46
USF1P22415 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
USF1P22415 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USF1P22415 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.95■□□□□ 0.46
USF1P22415 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 AP001160.3-201ENST00000601484 763 ntBASIC17.95■□□□□ 0.46
USF1P22415 UBE2DNL-204ENST00000602536 740 ntBASIC17.95■□□□□ 0.46
USF1P22415 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.95■□□□□ 0.46
USF1P22415 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.95■□□□□ 0.46
USF1P22415 AL117328.2-201ENST00000624617 1940 ntBASIC17.95■□□□□ 0.46
USF1P22415 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.95■□□□□ 0.46
USF1P22415 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USF1P22415 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
USF1P22415 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.95■□□□□ 0.46
USF1P22415 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
USF1P22415 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF1P22415 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.94■□□□□ 0.46
USF1P22415 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USF1P22415 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF1P22415 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.94■□□□□ 0.46
USF1P22415 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
USF1P22415 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.94■□□□□ 0.46
USF1P22415 AC083906.2-201ENST00000511578 360 ntBASIC17.94■□□□□ 0.46
USF1P22415 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USF1P22415 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.94■□□□□ 0.46
USF1P22415 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.94■□□□□ 0.46
USF1P22415 AC005181.1-201ENST00000604782 1256 ntBASIC17.94■□□□□ 0.46
USF1P22415 C1orf229-201ENST00000623686 2258 ntBASIC17.94■□□□□ 0.46
USF1P22415 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USF1P22415 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF1P22415 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USF1P22415 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USF1P22415 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USF1P22415 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USF1P22415 ABHD17AP1-201ENST00000358206 933 ntBASIC17.93■□□□□ 0.46
USF1P22415 DUX4L16-201ENST00000555130 1264 ntBASIC17.93■□□□□ 0.46
USF1P22415 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.93■□□□□ 0.46
USF1P22415 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.93■□□□□ 0.46
USF1P22415 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms