Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC26.29■■□□□ 1.8
COL4A1P02462 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
COL4A1P02462 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
COL4A1P02462 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
COL4A1P02462 AC073210.2-201ENST00000430369 194 ntBASIC26.28■■□□□ 1.8
COL4A1P02462 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC26.28■■□□□ 1.8
COL4A1P02462 SLC7A5P1-201ENST00000568957 537 ntBASIC26.28■■□□□ 1.8
COL4A1P02462 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.28■■□□□ 1.8
COL4A1P02462 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.28■■□□□ 1.8
COL4A1P02462 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
COL4A1P02462 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC26.28■■□□□ 1.8
COL4A1P02462 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC26.28■■□□□ 1.8
COL4A1P02462 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC26.28■■□□□ 1.8
COL4A1P02462 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
COL4A1P02462 AC066615.1-201ENST00000640911 628 ntBASIC26.28■■□□□ 1.8
COL4A1P02462 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A1P02462 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A1P02462 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.27■■□□□ 1.8
COL4A1P02462 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A1P02462 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
COL4A1P02462 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL4A1P02462 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A1P02462 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL4A1P02462 RNF146-206ENST00000480444 843 ntTSL 2 BASIC26.27■■□□□ 1.8
COL4A1P02462 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC26.27■■□□□ 1.8
COL4A1P02462 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A1P02462 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.8
COL4A1P02462 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.8
COL4A1P02462 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC26.26■■□□□ 1.79
COL4A1P02462 AC061975.6-201ENST00000579045 1553 ntBASIC26.26■■□□□ 1.79
COL4A1P02462 TMEM191A-211ENST00000637163 1067 ntBASIC26.26■■□□□ 1.79
COL4A1P02462 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26.26■■□□□ 1.79
COL4A1P02462 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC26.26■■□□□ 1.79
COL4A1P02462 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC26.26■■□□□ 1.79
COL4A1P02462 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A1P02462 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC26.25■■□□□ 1.79
COL4A1P02462 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 MKRN4P-201ENST00000444706 1521 ntBASIC26.25■■□□□ 1.79
COL4A1P02462 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC26.25■■□□□ 1.79
COL4A1P02462 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
COL4A1P02462 MIPEPP3-201ENST00000412105 444 ntBASIC26.25■■□□□ 1.79
COL4A1P02462 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.25■■□□□ 1.79
COL4A1P02462 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A1P02462 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC26.24■■□□□ 1.79
COL4A1P02462 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
COL4A1P02462 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC26.24■■□□□ 1.79
COL4A1P02462 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A1P02462 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
COL4A1P02462 RBM17P2-201ENST00000616397 1405 ntBASIC26.23■■□□□ 1.79
COL4A1P02462 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A1P02462 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC26.23■■□□□ 1.79
COL4A1P02462 AC080038.3-201ENST00000623346 1952 ntBASIC26.23■■□□□ 1.79
COL4A1P02462 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
COL4A1P02462 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.23■■□□□ 1.79
COL4A1P02462 TBCB-214ENST00000629269 413 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A1P02462 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A1P02462 C9orf163-202ENST00000624034 2573 ntBASIC26.23■■□□□ 1.79
COL4A1P02462 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.23■■□□□ 1.79
COL4A1P02462 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.23■■□□□ 1.79
COL4A1P02462 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms