Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.04■□□□□ 0.48
SDCBPO00560 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SDCBPO00560 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SDCBPO00560 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 MIR3181-201ENST00000578512 73 ntBASIC18.03■□□□□ 0.48
SDCBPO00560 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.03■□□□□ 0.48
SDCBPO00560 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.03■□□□□ 0.48
SDCBPO00560 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.03■□□□□ 0.48
SDCBPO00560 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SDCBPO00560 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.03■□□□□ 0.48
SDCBPO00560 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SDCBPO00560 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDCBPO00560 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.03■□□□□ 0.48
SDCBPO00560 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SDCBPO00560 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SDCBPO00560 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
SDCBPO00560 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
SDCBPO00560 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDCBPO00560 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.02■□□□□ 0.48
SDCBPO00560 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDCBPO00560 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SDCBPO00560 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.02■□□□□ 0.48
SDCBPO00560 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.02■□□□□ 0.48
SDCBPO00560 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.02■□□□□ 0.48
SDCBPO00560 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SDCBPO00560 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.02■□□□□ 0.47
SDCBPO00560 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SDCBPO00560 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SDCBPO00560 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.02■□□□□ 0.47
SDCBPO00560 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SDCBPO00560 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.02■□□□□ 0.47
SDCBPO00560 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.02■□□□□ 0.47
SDCBPO00560 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
SDCBPO00560 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SDCBPO00560 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SDCBPO00560 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.01■□□□□ 0.47
SDCBPO00560 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SDCBPO00560 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SDCBPO00560 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.01■□□□□ 0.47
SDCBPO00560 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
SDCBPO00560 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SDCBPO00560 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18■□□□□ 0.47
SDCBPO00560 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SDCBPO00560 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SDCBPO00560 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18■□□□□ 0.47
SDCBPO00560 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18■□□□□ 0.47
SDCBPO00560 MIR4466-201ENST00000606121 54 ntBASIC18■□□□□ 0.47
SDCBPO00560 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SDCBPO00560 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SDCBPO00560 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SDCBPO00560 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.99■□□□□ 0.47
SDCBPO00560 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 AC131281.2-201ENST00000520478 145 ntBASIC17.99■□□□□ 0.47
SDCBPO00560 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.99■□□□□ 0.47
SDCBPO00560 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SDCBPO00560 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDCBPO00560 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms