Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 LINC01006-201ENST00000333319 2292 ntBASIC20.17■□□□□ 0.82
PDLIM1O00151 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.17■□□□□ 0.82
PDLIM1O00151 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.17■□□□□ 0.82
PDLIM1O00151 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PDLIM1O00151 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
PDLIM1O00151 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDLIM1O00151 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDLIM1O00151 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.17■□□□□ 0.82
PDLIM1O00151 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM1O00151 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PDLIM1O00151 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.16■□□□□ 0.82
PDLIM1O00151 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.16■□□□□ 0.82
PDLIM1O00151 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.16■□□□□ 0.82
PDLIM1O00151 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.16■□□□□ 0.82
PDLIM1O00151 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM1O00151 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.15■□□□□ 0.82
PDLIM1O00151 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PDLIM1O00151 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
PDLIM1O00151 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM1O00151 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.14■□□□□ 0.81
PDLIM1O00151 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.14■□□□□ 0.81
PDLIM1O00151 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
PDLIM1O00151 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.14■□□□□ 0.81
PDLIM1O00151 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.14■□□□□ 0.81
PDLIM1O00151 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM1O00151 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
PDLIM1O00151 AC026471.1-201ENST00000564629 3026 ntBASIC20.13■□□□□ 0.81
PDLIM1O00151 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.13■□□□□ 0.81
PDLIM1O00151 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
PDLIM1O00151 AL117332.1-201ENST00000622628 974 ntBASIC20.13■□□□□ 0.81
PDLIM1O00151 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.13■□□□□ 0.81
PDLIM1O00151 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.13■□□□□ 0.81
PDLIM1O00151 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PDLIM1O00151 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.13■□□□□ 0.81
PDLIM1O00151 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM1O00151 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PDLIM1O00151 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PDLIM1O00151 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.12■□□□□ 0.81
PDLIM1O00151 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.12■□□□□ 0.81
PDLIM1O00151 MIR3621-201ENST00000580529 85 ntBASIC20.12■□□□□ 0.81
PDLIM1O00151 AC131212.1-201ENST00000613771 668 ntBASIC20.12■□□□□ 0.81
PDLIM1O00151 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.12■□□□□ 0.81
PDLIM1O00151 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PDLIM1O00151 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.12■□□□□ 0.81
PDLIM1O00151 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM1O00151 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.12■□□□□ 0.81
PDLIM1O00151 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM1O00151 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM1O00151 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM1O00151 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.11■□□□□ 0.81
PDLIM1O00151 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms