Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PPP4R2-206ENST00000488810 877 ntTSL 528.58■■■□□ 2.173e-8■■■■□ 26.7
SF3B1O75533 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.172e-7■■■■□ 26.7
SF3B1O75533 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.04■■■□□ 2.082e-7■■■■□ 26.7
SF3B1O75533 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.032e-7■■■■□ 26.7
SF3B1O75533 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.48■■□□□ 1.992e-7■■■■□ 26.7
SF3B1O75533 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.6■■□□□ 1.854e-9■■■■□ 26.7
SF3B1O75533 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.714e-9■■■■□ 26.7
SF3B1O75533 XIAP-203ENST00000422098 390 ntTSL 425.4■■□□□ 1.662e-6■■■■□ 26.7
SF3B1O75533 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.612e-7■■■■□ 26.7
SF3B1O75533 GADD45A-203ENST00000460575 874 ntTSL 224.81■■□□□ 1.568e-7■■■■□ 26.7
SF3B1O75533 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.63■■□□□ 1.532e-6■■■■□ 26.7
SF3B1O75533 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.54■■□□□ 1.522e-7■■■■□ 26.7
SF3B1O75533 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.482e-7■■■■□ 26.7
SF3B1O75533 RCE1-203ENST00000524849 1428 ntTSL 1 (best)23.85■■□□□ 1.412e-6■■■■□ 26.7
SF3B1O75533 GADD45A-204ENST00000484245 688 ntTSL 1 (best)23.5■■□□□ 1.358e-7■■■■□ 26.7
SF3B1O75533 SAE1-211ENST00000600753 483 ntTSL 423.39■■□□□ 1.342e-6■■■■□ 26.7
SF3B1O75533 CPNE7-203ENST00000525982 576 ntTSL 523.24■■□□□ 1.312e-7■■■■□ 26.7
SF3B1O75533 CHD3-204ENST00000439235 1263 ntTSL 522.12■■□□□ 1.132e-6■■■■□ 26.7
SF3B1O75533 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.11■■□□□ 1.132e-6■■■■□ 26.7
SF3B1O75533 KLHL22-208ENST00000470335 824 ntTSL 221.94■■□□□ 1.12e-6■■■■□ 26.7
SF3B1O75533 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-6■■■■□ 26.7
SF3B1O75533 MSH5-210ENST00000463094 796 ntTSL 221.86■■□□□ 1.093e-8■■■■□ 26.7
SF3B1O75533 MSH5-215ENST00000482280 944 ntTSL 221.86■■□□□ 1.093e-8■■■■□ 26.7
SF3B1O75533 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.62■■□□□ 1.052e-6■■■■□ 26.7
SF3B1O75533 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.54■■□□□ 1.042e-7■■■■□ 26.7
SF3B1O75533 BTNL9-205ENST00000509395 611 ntTSL 421.54■■□□□ 1.042e-6■■■■□ 26.7
SF3B1O75533 XIAP-207ENST00000468691 764 ntTSL 521.29■■□□□ 12e-6■■■■□ 26.7
SF3B1O75533 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.993e-8■■■■□ 26.7
SF3B1O75533 LMAN2-202ENST00000502560 876 ntTSL 320.96■□□□□ 0.952e-7■■■■□ 26.7
SF3B1O75533 CLK2-205ENST00000476983 1885 ntTSL 1 (best)20.95■□□□□ 0.944e-9■■■■□ 26.7
SF3B1O75533 RCE1-207ENST00000533277 2719 ntTSL 220.81■□□□□ 0.922e-6■■■■□ 26.7
SF3B1O75533 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.92e-6■■■■□ 26.7
SF3B1O75533 CSNK1G2-205ENST00000589385 896 ntTSL 520.34■□□□□ 0.852e-6■■■■□ 26.7
SF3B1O75533 MSH5-207ENST00000425703 694 ntTSL 520.21■□□□□ 0.833e-8■■■■□ 26.7
SF3B1O75533 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.19■□□□□ 0.822e-6■■■■□ 26.7
SF3B1O75533 ABHD17A-203ENST00000588598 5425 ntTSL 220.14■□□□□ 0.812e-6■■■■□ 26.7
SF3B1O75533 XIAP-210ENST00000497640 533 ntTSL 1 (best)20.13■□□□□ 0.812e-6■■■■□ 26.7
SF3B1O75533 BTNL9-207ENST00000511589 571 ntTSL 420.04■□□□□ 0.82e-6■■■■□ 26.7
SF3B1O75533 SAE1-208ENST00000597808 570 ntTSL 219.5■□□□□ 0.712e-6■■■■□ 26.7
SF3B1O75533 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.674e-9■■■■□ 26.7
SF3B1O75533 TYK2-213ENST00000529739 842 ntTSL 219.01■□□□□ 0.631e-8■■■■□ 26.7
SF3B1O75533 MAPRE3-206ENST00000475633 1160 ntTSL 218.87■□□□□ 0.612e-6■■■■□ 26.7
SF3B1O75533 TRMT2A-209ENST00000463710 757 ntTSL 318.85■□□□□ 0.612e-6■■■■□ 26.7
SF3B1O75533 TRMT2A-212ENST00000471040 848 ntTSL 318.85■□□□□ 0.612e-6■■■■□ 26.7
SF3B1O75533 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.62e-7■■■■□ 26.7
SF3B1O75533 CSNK1G2-204ENST00000589350 780 ntTSL 518.66■□□□□ 0.582e-6■■■■□ 26.7
SF3B1O75533 LMAN2-206ENST00000513877 823 ntTSL 218.62■□□□□ 0.572e-7■■■■□ 26.7
SF3B1O75533 CSNK1G2-209ENST00000591752 648 ntTSL 518.61■□□□□ 0.572e-6■■■■□ 26.7
SF3B1O75533 GLYR1-206ENST00000587875 630 ntTSL 218.52■□□□□ 0.562e-6■■■■□ 26.7
SF3B1O75533 NCOA1-207ENST00000469850 537 ntTSL 518.41■□□□□ 0.542e-7■■■■□ 26.7
SF3B1O75533 NCOA1-211ENST00000496333 501 ntTSL 318.27■□□□□ 0.522e-7■■■■□ 26.7
SF3B1O75533 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.23■□□□□ 0.512e-7■■■■□ 26.7
SF3B1O75533 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.492e-6■■■■□ 26.7
SF3B1O75533 LAMA5-214ENST00000497363 579 ntTSL 318.09■□□□□ 0.492e-6■■■■□ 26.7
SF3B1O75533 SUN1-226ENST00000467483 992 ntTSL 217.6■□□□□ 0.412e-6■■■■□ 26.7
SF3B1O75533 TULP4-204ENST00000613390 804 ntTSL 517.57■□□□□ 0.42e-6■■■■□ 26.7
SF3B1O75533 NCBP2-202ENST00000411704 564 ntTSL 517.54■□□□□ 0.42e-6■■■■□ 26.7
SF3B1O75533 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.42e-6■■■■□ 26.7
SF3B1O75533 POLE3-203ENST00000475080 455 ntTSL 217.5■□□□□ 0.392e-7■■■■□ 26.7
SF3B1O75533 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.392e-6■■■■□ 26.7
SF3B1O75533 CHD3-215ENST00000572750 750 ntTSL 317.16■□□□□ 0.342e-6■■■■□ 26.7
SF3B1O75533 XIAP-208ENST00000481776 598 ntTSL 517.08■□□□□ 0.322e-6■■■■□ 26.7
SF3B1O75533 XIAP-211ENST00000497906 495 ntTSL 517.08■□□□□ 0.322e-6■■■■□ 26.7
SF3B1O75533 PRMT1-210ENST00000528126 642 ntTSL 216.96■□□□□ 0.32e-6■■■■□ 26.7
SF3B1O75533 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.95■□□□□ 0.32e-7■■■■□ 26.7
SF3B1O75533 SEPT5-208ENST00000431124 920 ntTSL 516.92■□□□□ 0.32e-7■■■■□ 26.7
SF3B1O75533 MKNK2-207ENST00000588014 2413 ntTSL 216.8■□□□□ 0.282e-6■■■■□ 26.7
SF3B1O75533 SAE1-205ENST00000594144 723 ntTSL 316.71■□□□□ 0.272e-6■■■■□ 26.7
SF3B1O75533 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.68■□□□□ 0.262e-6■■■■□ 26.7
SF3B1O75533 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)16.54■□□□□ 0.242e-7■■■■□ 26.7
SF3B1O75533 ANO9-204ENST00000525857 466 ntTSL 416.36■□□□□ 0.212e-6■■■■□ 26.7
SF3B1O75533 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.22e-7■■■■□ 26.7
SF3B1O75533 NPLOC4-207ENST00000572346 567 ntTSL 416.3■□□□□ 0.22e-7■■■■□ 26.7
SF3B1O75533 TRMT2A-208ENST00000459644 582 ntTSL 316■□□□□ 0.152e-6■■■■□ 26.7
SF3B1O75533 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16■□□□□ 0.152e-6■■■■□ 26.7
SF3B1O75533 C14orf159-227ENST00000523576 860 ntTSL 315.7■□□□□ 0.13e-8■■■■□ 26.7
SF3B1O75533 NCBP2-211ENST00000468923 1096 ntTSL 215.69■□□□□ 0.12e-6■■■■□ 26.7
SF3B1O75533 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.65■□□□□ 0.12e-7■■■■□ 26.7
SF3B1O75533 NPLOC4-218ENST00000574964 572 ntTSL 415.65■□□□□ 0.12e-7■■■■□ 26.7
SF3B1O75533 JAK2-204ENST00000636127 2615 ntTSL 515.14■□□□□ 0.012e-7■■■■□ 26.7
SF3B1O75533 XIAP-206ENST00000468503 157 ntTSL 314.92□□□□□ -0.022e-6■■■■□ 26.7
SF3B1O75533 POLE3-204ENST00000479871 2396 ntTSL 214.83□□□□□ -0.042e-7■■■■□ 26.7
SF3B1O75533 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.77□□□□□ -0.052e-6■■■■□ 26.7
SF3B1O75533 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)14.7□□□□□ -0.062e-7■■■■□ 26.7
SF3B1O75533 PLXNB2-206ENST00000434732 253 ntTSL 214.47□□□□□ -0.092e-6■■■■□ 26.7
SF3B1O75533 SAE1-206ENST00000594526 709 ntTSL 314.44□□□□□ -0.12e-6■■■■□ 26.7
SF3B1O75533 TYK2-221ENST00000592137 536 ntTSL 314.4□□□□□ -0.11e-8■■■■□ 26.7
SF3B1O75533 LMAN2-203ENST00000502721 639 ntTSL 314.32□□□□□ -0.122e-7■■■■□ 26.7
SF3B1O75533 NCBP2-213ENST00000482976 669 ntTSL 214.3□□□□□ -0.122e-6■■■■□ 26.7
SF3B1O75533 NCBP2-205ENST00000428425 2220 ntTSL 1 (best)14.26□□□□□ -0.132e-6■■■■□ 26.7
SF3B1O75533 C14orf159-205ENST00000517306 2294 ntTSL 1 (best)14.01□□□□□ -0.173e-8■■■■□ 26.7
SF3B1O75533 NPLOC4-213ENST00000573519 654 ntTSL 1 (best)13.94□□□□□ -0.182e-7■■■■□ 26.7
SF3B1O75533 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC13.91□□□□□ -0.182e-7■■■■□ 26.7
SF3B1O75533 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.212e-7■■■■□ 26.7
SF3B1O75533 TPM4-212ENST00000590180 521 ntTSL 313.19□□□□□ -0.32e-7■■■■□ 26.7
SF3B1O75533 SUN1-214ENST00000435699 676 ntTSL 313.15□□□□□ -0.32e-6■■■■□ 26.7
SF3B1O75533 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC13.13□□□□□ -0.313e-8■■■■□ 26.7
SF3B1O75533 C1orf216-201ENST00000270815 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.324e-9■■■■□ 26.7
SF3B1O75533 NCBP2-201ENST00000321256 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.342e-6■■■■□ 26.7
SF3B1O75533 NUP37-208ENST00000551744 762 ntTSL 512.91□□□□□ -0.342e-6■■■■□ 26.7
Retrieved 100 of 46,956 protein–RNA pairs in 3263.9 ms