Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 AC003102.1-202ENST00000563394 1796 ntBASIC21.1■□□□□ 0.97
MKS1Q9NXB0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MKS1Q9NXB0 LINC01006-201ENST00000333319 2292 ntBASIC21.09■□□□□ 0.97
MKS1Q9NXB0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MKS1Q9NXB0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 MIR3181-201ENST00000578512 73 ntBASIC21.08■□□□□ 0.97
MKS1Q9NXB0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
MKS1Q9NXB0 AC099791.2-201ENST00000605725 427 ntBASIC21.08■□□□□ 0.97
MKS1Q9NXB0 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MKS1Q9NXB0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
MKS1Q9NXB0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MKS1Q9NXB0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MKS1Q9NXB0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
MKS1Q9NXB0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 UNC93B8-201ENST00000511903 705 ntBASIC21.07■□□□□ 0.96
MKS1Q9NXB0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MKS1Q9NXB0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MKS1Q9NXB0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MKS1Q9NXB0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 AC009299.2-201ENST00000482477 511 ntBASIC21.04■□□□□ 0.96
MKS1Q9NXB0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.04■□□□□ 0.96
MKS1Q9NXB0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms