Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 AC093787.1-201ENST00000450396 207 ntBASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 RNA5SP413-201ENST00000516373 109 ntBASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UPF3AQ9H1J1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 AC016405.3-201ENST00000607710 860 ntBASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.86■■□□□ 1.41
UPF3AQ9H1J1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 AC069236.1-201ENST00000604339 616 ntBASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
UPF3AQ9H1J1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 AC093827.2-201ENST00000512654 315 ntBASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 DET1-205ENST00000558413 583 ntTSL 4 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 AC008694.1-202ENST00000636953 945 ntBASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.84■■□□□ 1.41
UPF3AQ9H1J1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 PRORSD1P-201ENST00000295112 541 ntBASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
UPF3AQ9H1J1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 MYC-209ENST00000641252 345 ntBASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3AQ9H1J1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 KRT18P29-201ENST00000397031 1267 ntBASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms