Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 GOLGA2P6-201ENST00000340929 2049 ntBASIC13.4□□□□□ -0.26
LINC00643Q86TS7 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00643Q86TS7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
LINC00643Q86TS7 PCDHAC2-203ENST00000615316 3011 ntBASIC13.39□□□□□ -0.27
LINC00643Q86TS7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00643Q86TS7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 AP000974.1-201ENST00000623909 2387 ntBASIC13.38□□□□□ -0.27
LINC00643Q86TS7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
LINC00643Q86TS7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 BID-204ENST00000399767 2129 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC13.37□□□□□ -0.27
LINC00643Q86TS7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms