Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC58Q4VC31 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 AC092028.1-203ENST00000608262 953 ntBASIC18.98■□□□□ 0.63
CCDC58Q4VC31 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC58Q4VC31 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC58Q4VC31 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 AC079089.2-201ENST00000531211 1277 ntBASIC18.96■□□□□ 0.63
CCDC58Q4VC31 AL033527.3-201ENST00000566366 1196 ntBASIC18.96■□□□□ 0.63
CCDC58Q4VC31 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 AC104564.3-201ENST00000582367 638 ntBASIC18.96■□□□□ 0.63
CCDC58Q4VC31 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC58Q4VC31 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 AL031602.1-201ENST00000633169 911 ntBASIC18.95■□□□□ 0.62
CCDC58Q4VC31 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC58Q4VC31 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC58Q4VC31 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms