Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN6P56747 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
CLDN6P56747 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.54■□□□□ 0.88
CLDN6P56747 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN6P56747 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.54■□□□□ 0.88
CLDN6P56747 AC083880.1-201ENST00000608266 535 ntBASIC20.54■□□□□ 0.88
CLDN6P56747 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN6P56747 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CLDN6P56747 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 BX276092.2-201ENST00000417668 665 ntBASIC20.53■□□□□ 0.88
CLDN6P56747 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.53■□□□□ 0.88
CLDN6P56747 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
CLDN6P56747 AC079089.2-201ENST00000531211 1277 ntBASIC20.53■□□□□ 0.88
CLDN6P56747 KRT18P20-201ENST00000548986 1279 ntBASIC20.53■□□□□ 0.88
CLDN6P56747 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CLDN6P56747 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN6P56747 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CLDN6P56747 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN6P56747 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CLDN6P56747 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.52■□□□□ 0.88
CLDN6P56747 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.52■□□□□ 0.88
CLDN6P56747 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.52■□□□□ 0.88
CLDN6P56747 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN6P56747 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.52■□□□□ 0.87
CLDN6P56747 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CLDN6P56747 LINC01960-201ENST00000563759 1884 ntBASIC20.52■□□□□ 0.87
CLDN6P56747 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CLDN6P56747 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CLDN6P56747 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CLDN6P56747 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.51■□□□□ 0.87
CLDN6P56747 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLDN6P56747 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.51■□□□□ 0.87
CLDN6P56747 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN6P56747 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 ESRRAP1-201ENST00000400596 1257 ntBASIC20.5■□□□□ 0.87
CLDN6P56747 AL158047.1-201ENST00000445918 881 ntBASIC20.5■□□□□ 0.87
CLDN6P56747 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.5■□□□□ 0.87
CLDN6P56747 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLDN6P56747 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLDN6P56747 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLDN6P56747 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CLDN6P56747 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CLDN6P56747 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.49■□□□□ 0.87
CLDN6P56747 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.49■□□□□ 0.87
CLDN6P56747 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.49■□□□□ 0.87
CLDN6P56747 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.49■□□□□ 0.87
CLDN6P56747 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.49■□□□□ 0.87
CLDN6P56747 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLDN6P56747 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN6P56747 AL596275.1-201ENST00000423464 877 ntBASIC20.48■□□□□ 0.87
CLDN6P56747 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN6P56747 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 AC092118.2-201ENST00000613495 667 ntBASIC20.48■□□□□ 0.87
CLDN6P56747 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.48■□□□□ 0.87
CLDN6P56747 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CLDN6P56747 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CLDN6P56747 ANOS2P-203ENST00000472227 1816 ntBASIC20.48■□□□□ 0.87
CLDN6P56747 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN6P56747 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms