Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 AC003102.1-202ENST00000563394 1796 ntBASIC20.67■□□□□ 0.9
FOXA1P55317 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.67■□□□□ 0.9
FOXA1P55317 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.67■□□□□ 0.9
FOXA1P55317 DUX4L19-201ENST00000557448 1267 ntBASIC20.67■□□□□ 0.9
FOXA1P55317 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.67■□□□□ 0.9
FOXA1P55317 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
FOXA1P55317 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.67■□□□□ 0.9
FOXA1P55317 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 AP004607.7-201ENST00000527152 1677 ntBASIC20.67■□□□□ 0.9
FOXA1P55317 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA1P55317 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.67■□□□□ 0.9
FOXA1P55317 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
FOXA1P55317 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
FOXA1P55317 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
FOXA1P55317 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
FOXA1P55317 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.66■□□□□ 0.9
FOXA1P55317 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.66■□□□□ 0.9
FOXA1P55317 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.66■□□□□ 0.9
FOXA1P55317 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.66■□□□□ 0.9
FOXA1P55317 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.66■□□□□ 0.9
FOXA1P55317 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
FOXA1P55317 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
FOXA1P55317 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
FOXA1P55317 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.66■□□□□ 0.9
FOXA1P55317 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
FOXA1P55317 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
FOXA1P55317 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.65■□□□□ 0.9
FOXA1P55317 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 AP005435.1-201ENST00000529293 1178 ntBASIC20.65■□□□□ 0.9
FOXA1P55317 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.65■□□□□ 0.9
FOXA1P55317 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
FOXA1P55317 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA1P55317 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
FOXA1P55317 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.64■□□□□ 0.9
FOXA1P55317 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
FOXA1P55317 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
FOXA1P55317 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
FOXA1P55317 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.64■□□□□ 0.89
FOXA1P55317 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA1P55317 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.64■□□□□ 0.89
FOXA1P55317 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
FOXA1P55317 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA1P55317 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.64■□□□□ 0.89
FOXA1P55317 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.64■□□□□ 0.89
FOXA1P55317 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA1P55317 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA1P55317 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.64■□□□□ 0.89
FOXA1P55317 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA1P55317 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.64■□□□□ 0.89
FOXA1P55317 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.63■□□□□ 0.89
FOXA1P55317 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.63■□□□□ 0.89
FOXA1P55317 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA1P55317 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
FOXA1P55317 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
FOXA1P55317 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA1P55317 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
FOXA1P55317 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.62■□□□□ 0.89
FOXA1P55317 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA1P55317 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.62■□□□□ 0.89
FOXA1P55317 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA1P55317 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA1P55317 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA1P55317 AL157384.1-201ENST00000445995 2473 ntBASIC20.62■□□□□ 0.89
FOXA1P55317 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.62■□□□□ 0.89
FOXA1P55317 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.61■□□□□ 0.89
FOXA1P55317 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.61■□□□□ 0.89
FOXA1P55317 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.61■□□□□ 0.89
FOXA1P55317 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.61■□□□□ 0.89
FOXA1P55317 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.61■□□□□ 0.89
FOXA1P55317 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA1P55317 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXA1P55317 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms