Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC28.57■■■□□ 2.16
COL18A1P39060 AC091874.3-201ENST00000512672 1195 ntBASIC28.57■■■□□ 2.16
COL18A1P39060 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC28.57■■■□□ 2.16
COL18A1P39060 AC069236.1-201ENST00000604339 616 ntBASIC28.57■■■□□ 2.16
COL18A1P39060 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL18A1P39060 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.57■■■□□ 2.16
COL18A1P39060 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL18A1P39060 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.56■■■□□ 2.16
COL18A1P39060 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC28.56■■■□□ 2.16
COL18A1P39060 THRA-202ENST00000394121 2260 ntTSL 2 BASIC28.56■■■□□ 2.16
COL18A1P39060 RBM17P2-201ENST00000616397 1405 ntBASIC28.56■■■□□ 2.16
COL18A1P39060 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL18A1P39060 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC28.56■■■□□ 2.16
COL18A1P39060 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC28.56■■■□□ 2.16
COL18A1P39060 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL18A1P39060 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL18A1P39060 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC28.56■■■□□ 2.16
COL18A1P39060 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL18A1P39060 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC28.55■■■□□ 2.16
COL18A1P39060 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC28.55■■■□□ 2.16
COL18A1P39060 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC28.55■■■□□ 2.16
COL18A1P39060 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC28.55■■■□□ 2.16
COL18A1P39060 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC28.55■■■□□ 2.16
COL18A1P39060 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL18A1P39060 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL18A1P39060 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL18A1P39060 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC28.55■■■□□ 2.16
COL18A1P39060 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC28.55■■■□□ 2.16
COL18A1P39060 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC28.55■■■□□ 2.16
COL18A1P39060 AL162412.1-201ENST00000567129 965 ntBASIC28.55■■■□□ 2.16
COL18A1P39060 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC28.55■■■□□ 2.16
COL18A1P39060 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
COL18A1P39060 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
COL18A1P39060 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
COL18A1P39060 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
COL18A1P39060 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
COL18A1P39060 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL18A1P39060 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
COL18A1P39060 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL18A1P39060 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC28.54■■■□□ 2.16
COL18A1P39060 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC28.54■■■□□ 2.16
COL18A1P39060 AC010980.2-201ENST00000587099 1412 ntBASIC28.54■■■□□ 2.16
COL18A1P39060 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC28.53■■■□□ 2.16
COL18A1P39060 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC28.53■■■□□ 2.16
COL18A1P39060 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL18A1P39060 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC28.53■■■□□ 2.16
COL18A1P39060 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL18A1P39060 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC28.52■■■□□ 2.16
COL18A1P39060 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC28.52■■■□□ 2.16
COL18A1P39060 ISCU-212ENST00000547005 795 ntTSL 3 BASIC28.52■■■□□ 2.16
COL18A1P39060 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC28.52■■■□□ 2.16
COL18A1P39060 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.52■■■□□ 2.16
COL18A1P39060 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC28.52■■■□□ 2.16
COL18A1P39060 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC28.52■■■□□ 2.16
COL18A1P39060 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL18A1P39060 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL18A1P39060 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
COL18A1P39060 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC28.52■■■□□ 2.16
COL18A1P39060 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL18A1P39060 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC28.51■■■□□ 2.15
COL18A1P39060 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC28.51■■■□□ 2.15
COL18A1P39060 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC28.51■■■□□ 2.15
COL18A1P39060 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL18A1P39060 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC28.51■■■□□ 2.15
COL18A1P39060 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC28.51■■■□□ 2.15
COL18A1P39060 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC28.51■■■□□ 2.15
COL18A1P39060 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL18A1P39060 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
COL18A1P39060 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC28.5■■■□□ 2.15
COL18A1P39060 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
COL18A1P39060 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC28.5■■■□□ 2.15
COL18A1P39060 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL18A1P39060 INO80E-214ENST00000620599 515 ntTSL 2 BASIC28.5■■■□□ 2.15
COL18A1P39060 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC28.49■■■□□ 2.15
COL18A1P39060 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL18A1P39060 KRT16P2-201ENST00000414673 1423 ntBASIC28.49■■■□□ 2.15
COL18A1P39060 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL18A1P39060 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL18A1P39060 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL18A1P39060 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL18A1P39060 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC28.48■■■□□ 2.15
COL18A1P39060 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL18A1P39060 RNF146-206ENST00000480444 843 ntTSL 2 BASIC28.48■■■□□ 2.15
COL18A1P39060 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL18A1P39060 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL18A1P39060 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.48■■■□□ 2.15
COL18A1P39060 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
COL18A1P39060 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC28.47■■■□□ 2.15
COL18A1P39060 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC28.47■■■□□ 2.15
COL18A1P39060 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms