Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC26.38■■□□□ 1.81
COL4A1P02462 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
COL4A1P02462 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
COL4A1P02462 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A1P02462 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A1P02462 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
COL4A1P02462 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A1P02462 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A1P02462 AC105036.2-201ENST00000569468 176 ntBASIC26.37■■□□□ 1.81
COL4A1P02462 AC053503.5-201ENST00000601508 636 ntBASIC26.37■■□□□ 1.81
COL4A1P02462 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A1P02462 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A1P02462 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC26.36■■□□□ 1.81
COL4A1P02462 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
COL4A1P02462 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC26.36■■□□□ 1.81
COL4A1P02462 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A1P02462 AC007322.4-201ENST00000509611 723 ntBASIC26.36■■□□□ 1.81
COL4A1P02462 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A1P02462 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC26.35■■□□□ 1.81
COL4A1P02462 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
COL4A1P02462 SLC29A4P1-201ENST00000398760 971 ntBASIC26.35■■□□□ 1.81
COL4A1P02462 AC016405.3-201ENST00000607710 860 ntBASIC26.35■■□□□ 1.81
COL4A1P02462 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.35■■□□□ 1.81
COL4A1P02462 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A1P02462 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.35■■□□□ 1.81
COL4A1P02462 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A1P02462 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
COL4A1P02462 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC26.35■■□□□ 1.81
COL4A1P02462 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A1P02462 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC26.34■■□□□ 1.81
COL4A1P02462 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.34■■□□□ 1.81
COL4A1P02462 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.34■■□□□ 1.81
COL4A1P02462 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
COL4A1P02462 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
COL4A1P02462 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC26.34■■□□□ 1.81
COL4A1P02462 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.34■■□□□ 1.81
COL4A1P02462 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC26.34■■□□□ 1.81
COL4A1P02462 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.34■■□□□ 1.81
COL4A1P02462 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A1P02462 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A1P02462 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A1P02462 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A1P02462 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A1P02462 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A1P02462 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
COL4A1P02462 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC26.33■■□□□ 1.8
COL4A1P02462 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
COL4A1P02462 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC26.32■■□□□ 1.8
COL4A1P02462 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A1P02462 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC26.32■■□□□ 1.8
COL4A1P02462 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC26.32■■□□□ 1.8
COL4A1P02462 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.31■■□□□ 1.8
COL4A1P02462 TERF1P5-201ENST00000477545 1207 ntBASIC26.31■■□□□ 1.8
COL4A1P02462 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC26.31■■□□□ 1.8
COL4A1P02462 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.31■■□□□ 1.8
COL4A1P02462 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A1P02462 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC26.31■■□□□ 1.8
COL4A1P02462 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.31■■□□□ 1.8
COL4A1P02462 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC26.31■■□□□ 1.8
COL4A1P02462 AC083880.1-201ENST00000608266 535 ntBASIC26.31■■□□□ 1.8
COL4A1P02462 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
COL4A1P02462 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
COL4A1P02462 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.3■■□□□ 1.8
COL4A1P02462 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.3■■□□□ 1.8
COL4A1P02462 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
COL4A1P02462 AC026471.6-201ENST00000622954 1905 ntBASIC26.3■■□□□ 1.8
COL4A1P02462 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL4A1P02462 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A1P02462 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
COL4A1P02462 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A1P02462 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.29■■□□□ 1.8
COL4A1P02462 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.29■■□□□ 1.8
COL4A1P02462 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC26.29■■□□□ 1.8
COL4A1P02462 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms