Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 POU5F1P4-201ENST00000413175 1085 ntBASIC25.18■■□□□ 1.62
COL2A1P02458 AC069152.1-201ENST00000438030 544 ntBASIC25.18■■□□□ 1.62
COL2A1P02458 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL2A1P02458 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
COL2A1P02458 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
COL2A1P02458 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC25.18■■□□□ 1.62
COL2A1P02458 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL2A1P02458 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL2A1P02458 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL2A1P02458 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL2A1P02458 PLLP-204ENST00000569059 665 ntTSL 3 BASIC25.17■■□□□ 1.62
COL2A1P02458 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC25.17■■□□□ 1.62
COL2A1P02458 AC008175.2-201ENST00000612840 297 ntBASIC25.17■■□□□ 1.62
COL2A1P02458 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC25.17■■□□□ 1.62
COL2A1P02458 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL2A1P02458 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL2A1P02458 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL2A1P02458 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL2A1P02458 BET1L-204ENST00000410108 637 ntTSL 3 BASIC25.16■■□□□ 1.62
COL2A1P02458 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL2A1P02458 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.16■■□□□ 1.62
COL2A1P02458 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.16■■□□□ 1.62
COL2A1P02458 MARS-234ENST00000630571 216 ntTSL 5 BASIC25.16■■□□□ 1.62
COL2A1P02458 MARS-235ENST00000630803 183 ntTSL 3 BASIC25.16■■□□□ 1.62
COL2A1P02458 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.16■■□□□ 1.62
COL2A1P02458 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
COL2A1P02458 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
COL2A1P02458 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
COL2A1P02458 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC25.15■■□□□ 1.62
COL2A1P02458 AC098934.4-201ENST00000564127 592 ntBASIC25.15■■□□□ 1.62
COL2A1P02458 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.15■■□□□ 1.62
COL2A1P02458 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.15■■□□□ 1.62
COL2A1P02458 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL2A1P02458 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.15■■□□□ 1.62
COL2A1P02458 AC105036.2-201ENST00000569468 176 ntBASIC25.15■■□□□ 1.62
COL2A1P02458 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC25.15■■□□□ 1.62
COL2A1P02458 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC25.14■■□□□ 1.62
COL2A1P02458 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL2A1P02458 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
COL2A1P02458 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
COL2A1P02458 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL2A1P02458 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC25.14■■□□□ 1.61
COL2A1P02458 KRT18P6-201ENST00000555540 1265 ntBASIC25.14■■□□□ 1.61
COL2A1P02458 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC25.14■■□□□ 1.61
COL2A1P02458 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
COL2A1P02458 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.14■■□□□ 1.61
COL2A1P02458 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.61
COL2A1P02458 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
COL2A1P02458 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL2A1P02458 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL2A1P02458 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL2A1P02458 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL2A1P02458 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
COL2A1P02458 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
COL2A1P02458 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
COL2A1P02458 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC25.13■■□□□ 1.61
COL2A1P02458 CD99P1-205ENST00000527459 561 ntBASIC25.13■■□□□ 1.61
COL2A1P02458 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.13■■□□□ 1.61
COL2A1P02458 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.13■■□□□ 1.61
COL2A1P02458 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL2A1P02458 AL162412.1-201ENST00000567129 965 ntBASIC25.13■■□□□ 1.61
COL2A1P02458 AC120498.10-201ENST00000621827 505 ntBASIC25.13■■□□□ 1.61
COL2A1P02458 OR10C1-204ENST00000622521 1039 ntBASIC25.13■■□□□ 1.61
COL2A1P02458 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL2A1P02458 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC25.12■■□□□ 1.61
COL2A1P02458 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
COL2A1P02458 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL2A1P02458 RGMA-211ENST00000557420 989 ntTSL 3 BASIC25.12■■□□□ 1.61
COL2A1P02458 AC243732.1-201ENST00000612648 864 ntBASIC25.12■■□□□ 1.61
COL2A1P02458 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL2A1P02458 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.12■■□□□ 1.61
COL2A1P02458 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
COL2A1P02458 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL2A1P02458 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.11■■□□□ 1.61
COL2A1P02458 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL2A1P02458 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
COL2A1P02458 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
COL2A1P02458 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
COL2A1P02458 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL2A1P02458 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
COL2A1P02458 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
COL2A1P02458 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
COL2A1P02458 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.11■■□□□ 1.61
COL2A1P02458 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL2A1P02458 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL2A1P02458 RBM17P2-201ENST00000616397 1405 ntBASIC25.11■■□□□ 1.61
COL2A1P02458 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.1■■□□□ 1.61
COL2A1P02458 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL2A1P02458 AC127496.7-201ENST00000625110 1798 ntBASIC25.1■■□□□ 1.61
COL2A1P02458 BMP1-204ENST00000397814 836 ntTSL 4 BASIC25.1■■□□□ 1.61
COL2A1P02458 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC25.1■■□□□ 1.61
COL2A1P02458 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL2A1P02458 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.1■■□□□ 1.61
COL2A1P02458 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms