Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC006538.3-201ENST00000612495 578 ntBASIC20.5■□□□□ 0.87
CACNA1AO00555 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CACNA1AO00555 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1AO00555 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1AO00555 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CACNA1AO00555 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CACNA1AO00555 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 AC139426.1-201ENST00000568218 2529 ntBASIC20.49■□□□□ 0.87
CACNA1AO00555 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CACNA1AO00555 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CACNA1AO00555 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CACNA1AO00555 AC113347.1-201ENST00000413321 391 ntBASIC20.48■□□□□ 0.87
CACNA1AO00555 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.48■□□□□ 0.87
CACNA1AO00555 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.48■□□□□ 0.87
CACNA1AO00555 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.48■□□□□ 0.87
CACNA1AO00555 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.48■□□□□ 0.87
CACNA1AO00555 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.48■□□□□ 0.87
CACNA1AO00555 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CACNA1AO00555 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.48■□□□□ 0.87
CACNA1AO00555 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CACNA1AO00555 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 AC004687.1-201ENST00000579003 1625 ntBASIC20.47■□□□□ 0.87
CACNA1AO00555 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.47■□□□□ 0.87
CACNA1AO00555 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 AC133681.1-201ENST00000465482 601 ntBASIC20.47■□□□□ 0.87
CACNA1AO00555 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.47■□□□□ 0.87
CACNA1AO00555 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.47■□□□□ 0.87
CACNA1AO00555 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1AO00555 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.47■□□□□ 0.87
CACNA1AO00555 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CACNA1AO00555 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.47■□□□□ 0.87
CACNA1AO00555 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1AO00555 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1AO00555 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.46■□□□□ 0.87
CACNA1AO00555 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.46■□□□□ 0.87
CACNA1AO00555 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CACNA1AO00555 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1AO00555 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.46■□□□□ 0.87
CACNA1AO00555 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CACNA1AO00555 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CACNA1AO00555 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1AO00555 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.46■□□□□ 0.87
CACNA1AO00555 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CACNA1AO00555 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.45■□□□□ 0.87
CACNA1AO00555 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CACNA1AO00555 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.45■□□□□ 0.86
CACNA1AO00555 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
CACNA1AO00555 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 OXCT2P1-201ENST00000447263 1535 ntBASIC20.45■□□□□ 0.86
CACNA1AO00555 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CACNA1AO00555 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 POM121L13P-201ENST00000422362 380 ntBASIC20.45■□□□□ 0.86
CACNA1AO00555 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.45■□□□□ 0.86
CACNA1AO00555 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CACNA1AO00555 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.45■□□□□ 0.86
CACNA1AO00555 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.44■□□□□ 0.86
CACNA1AO00555 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.44■□□□□ 0.86
CACNA1AO00555 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.44■□□□□ 0.86
CACNA1AO00555 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CACNA1AO00555 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CACNA1AO00555 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CACNA1AO00555 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.44■□□□□ 0.86
CACNA1AO00555 KRT18P57-201ENST00000443599 1254 ntBASIC20.44■□□□□ 0.86
CACNA1AO00555 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CACNA1AO00555 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CACNA1AO00555 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CACNA1AO00555 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.44■□□□□ 0.86
CACNA1AO00555 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.44■□□□□ 0.86
CACNA1AO00555 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms