Protein–RNA interactions for Protein: Q9NRJ3

CCL28, C-C motif chemokine 28, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28Q9NRJ3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 AC104564.3-201ENST00000582367 638 ntBASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCL28Q9NRJ3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.68■□□□□ 0.42
CCL28Q9NRJ3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCL28Q9NRJ3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 AC099791.2-201ENST00000605725 427 ntBASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.66■□□□□ 0.42
CCL28Q9NRJ3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 AC073130.3-201ENST00000624389 2278 ntBASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCL28Q9NRJ3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.42
CCL28Q9NRJ3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCL28Q9NRJ3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCL28Q9NRJ3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.64■□□□□ 0.41
CCL28Q9NRJ3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms