Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
LIME1Q9H400 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIME1Q9H400 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.82■□□□□ 0.6
LIME1Q9H400 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIME1Q9H400 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.81■□□□□ 0.6
LIME1Q9H400 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.81■□□□□ 0.6
LIME1Q9H400 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.81■□□□□ 0.6
LIME1Q9H400 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIME1Q9H400 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.8■□□□□ 0.6
LIME1Q9H400 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.8■□□□□ 0.6
LIME1Q9H400 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.8■□□□□ 0.6
LIME1Q9H400 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.8■□□□□ 0.6
LIME1Q9H400 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.8■□□□□ 0.6
LIME1Q9H400 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.8■□□□□ 0.6
LIME1Q9H400 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.8■□□□□ 0.6
LIME1Q9H400 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LIME1Q9H400 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIME1Q9H400 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.79■□□□□ 0.6
LIME1Q9H400 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIME1Q9H400 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.79■□□□□ 0.6
LIME1Q9H400 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIME1Q9H400 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIME1Q9H400 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.78■□□□□ 0.6
LIME1Q9H400 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.78■□□□□ 0.6
LIME1Q9H400 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.78■□□□□ 0.6
LIME1Q9H400 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.78■□□□□ 0.6
LIME1Q9H400 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.78■□□□□ 0.6
LIME1Q9H400 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.78■□□□□ 0.6
LIME1Q9H400 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
LIME1Q9H400 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LIME1Q9H400 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIME1Q9H400 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LIME1Q9H400 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.77■□□□□ 0.6
LIME1Q9H400 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.77■□□□□ 0.6
LIME1Q9H400 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.77■□□□□ 0.6
LIME1Q9H400 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIME1Q9H400 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.77■□□□□ 0.6
LIME1Q9H400 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.77■□□□□ 0.59
LIME1Q9H400 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LIME1Q9H400 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
LIME1Q9H400 AC083906.2-201ENST00000511578 360 ntBASIC18.76■□□□□ 0.59
LIME1Q9H400 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.76■□□□□ 0.59
LIME1Q9H400 AC142086.2-201ENST00000569753 217 ntBASIC18.76■□□□□ 0.59
LIME1Q9H400 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 AL050303.2-201ENST00000619798 666 ntBASIC18.76■□□□□ 0.59
LIME1Q9H400 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.76■□□□□ 0.59
LIME1Q9H400 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIME1Q9H400 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.76■□□□□ 0.59
LIME1Q9H400 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms