Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AC092053.2-201ENST00000640557 1818 ntBASIC19.2■□□□□ 0.66
CPNE4Q96A23 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CPNE4Q96A23 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPNE4Q96A23 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CPNE4Q96A23 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
CPNE4Q96A23 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CPNE4Q96A23 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPNE4Q96A23 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.2■□□□□ 0.66
CPNE4Q96A23 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CPNE4Q96A23 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPNE4Q96A23 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.18■□□□□ 0.66
CPNE4Q96A23 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.18■□□□□ 0.66
CPNE4Q96A23 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPNE4Q96A23 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 AP006587.3-201ENST00000525742 1516 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L2-201ENST00000561772 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L6-201ENST00000626483 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L1-201ENST00000627662 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L8-201ENST00000629013 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L3-201ENST00000630187 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L7-201ENST00000630678 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 DUX4L5-201ENST00000630834 1275 ntBASIC19.17■□□□□ 0.66
CPNE4Q96A23 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPNE4Q96A23 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CPNE4Q96A23 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 AC079140.4-201ENST00000507448 529 ntBASIC19.16■□□□□ 0.66
CPNE4Q96A23 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.16■□□□□ 0.66
CPNE4Q96A23 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 AC055733.4-201ENST00000638462 1354 ntBASIC19.16■□□□□ 0.66
CPNE4Q96A23 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE4Q96A23 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE4Q96A23 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE4Q96A23 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.15■□□□□ 0.66
CPNE4Q96A23 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE4Q96A23 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE4Q96A23 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE4Q96A23 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.14■□□□□ 0.66
CPNE4Q96A23 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms