Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 AC139530.1-201ENST00000575312 1977 ntBASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNFT1Q5M7Z0 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNFT1Q5M7Z0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
RNFT1Q5M7Z0 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNFT1Q5M7Z0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.33■□□□□ 0.69
RNFT1Q5M7Z0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNFT1Q5M7Z0 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 GPX1P1-201ENST00000388829 606 ntBASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 AL355802.2-201ENST00000402069 882 ntBASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 EEF1DP3-203ENST00000566025 782 ntBASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNFT1Q5M7Z0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 AC007322.1-201ENST00000426983 750 ntBASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CNN2P6-201ENST00000439038 900 ntBASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 AC231657.2-201ENST00000624556 255 ntBASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNFT1Q5M7Z0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 AC005181.1-201ENST00000604782 1256 ntBASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.31■□□□□ 0.68
RNFT1Q5M7Z0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 AC083906.2-201ENST00000511578 360 ntBASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.3■□□□□ 0.68
RNFT1Q5M7Z0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms