Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC30.01■■■□□ 2.39
MSH6P52701 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC30.01■■■□□ 2.39
MSH6P52701 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC30.01■■■□□ 2.39
MSH6P52701 MIR4497-201ENST00000583208 89 ntBASIC30.01■■■□□ 2.39
MSH6P52701 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC30■■■□□ 2.39
MSH6P52701 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 GXYLT1P3-201ENST00000453058 1193 ntBASIC30■■■□□ 2.39
MSH6P52701 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC30■■■□□ 2.39
MSH6P52701 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
MSH6P52701 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC29.99■■■□□ 2.39
MSH6P52701 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
MSH6P52701 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
MSH6P52701 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
MSH6P52701 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
MSH6P52701 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC29.99■■■□□ 2.39
MSH6P52701 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC29.99■■■□□ 2.39
MSH6P52701 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC29.99■■■□□ 2.39
MSH6P52701 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
MSH6P52701 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29.99■■■□□ 2.39
MSH6P52701 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC29.99■■■□□ 2.39
MSH6P52701 AC010980.2-201ENST00000587099 1412 ntBASIC29.98■■■□□ 2.39
MSH6P52701 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
MSH6P52701 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
MSH6P52701 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
MSH6P52701 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
MSH6P52701 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC29.98■■■□□ 2.39
MSH6P52701 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC29.98■■■□□ 2.39
MSH6P52701 EEF1DP3-203ENST00000566025 782 ntBASIC29.98■■■□□ 2.39
MSH6P52701 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
MSH6P52701 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
MSH6P52701 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
MSH6P52701 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
MSH6P52701 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC29.97■■■□□ 2.39
MSH6P52701 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC29.97■■■□□ 2.39
MSH6P52701 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
MSH6P52701 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC29.97■■■□□ 2.39
MSH6P52701 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC29.96■■■□□ 2.39
MSH6P52701 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC29.96■■■□□ 2.39
MSH6P52701 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.96■■■□□ 2.39
MSH6P52701 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
MSH6P52701 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC29.95■■■□□ 2.39
MSH6P52701 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
MSH6P52701 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
MSH6P52701 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC29.95■■■□□ 2.39
MSH6P52701 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC29.95■■■□□ 2.39
MSH6P52701 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC29.95■■■□□ 2.39
MSH6P52701 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
MSH6P52701 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
MSH6P52701 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC29.95■■■□□ 2.39
MSH6P52701 AC020928.2-201ENST00000588717 2197 ntBASIC29.95■■■□□ 2.39
MSH6P52701 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
MSH6P52701 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.94■■■□□ 2.38
MSH6P52701 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
MSH6P52701 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
MSH6P52701 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC29.94■■■□□ 2.38
MSH6P52701 MAX-217ENST00000557277 728 ntTSL 3 BASIC29.94■■■□□ 2.38
MSH6P52701 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC29.94■■■□□ 2.38
MSH6P52701 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
MSH6P52701 LINC00543-201ENST00000567234 1845 ntBASIC29.94■■■□□ 2.38
MSH6P52701 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
MSH6P52701 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
MSH6P52701 SERPINH1P1-201ENST00000419794 1249 ntBASIC29.93■■■□□ 2.38
MSH6P52701 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC29.93■■■□□ 2.38
MSH6P52701 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC29.93■■■□□ 2.38
MSH6P52701 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC29.93■■■□□ 2.38
MSH6P52701 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC29.93■■■□□ 2.38
MSH6P52701 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC29.93■■■□□ 2.38
MSH6P52701 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
MSH6P52701 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC29.93■■■□□ 2.38
MSH6P52701 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
MSH6P52701 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
MSH6P52701 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
MSH6P52701 OR2A1-AS1-201ENST00000462305 773 ntBASIC29.92■■■□□ 2.38
MSH6P52701 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC29.92■■■□□ 2.38
MSH6P52701 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC29.92■■■□□ 2.38
MSH6P52701 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC29.92■■■□□ 2.38
MSH6P52701 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC29.92■■■□□ 2.38
MSH6P52701 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
MSH6P52701 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
MSH6P52701 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
MSH6P52701 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
MSH6P52701 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
MSH6P52701 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
MSH6P52701 AC211429.1-201ENST00000415277 523 ntBASIC29.91■■■□□ 2.38
MSH6P52701 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC29.91■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms