Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AF213884.3-201ENST00000563833 479 ntBASIC17.32■□□□□ 0.36
CDX1P47902 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CDX1P47902 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX1P47902 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX1P47902 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX1P47902 AC027682.1-201ENST00000562846 899 ntBASIC17.31■□□□□ 0.36
CDX1P47902 AL499627.2-201ENST00000606283 725 ntBASIC17.31■□□□□ 0.36
CDX1P47902 AC026310.3-201ENST00000625186 2373 ntBASIC17.31■□□□□ 0.36
CDX1P47902 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CDX1P47902 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CDX1P47902 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX1P47902 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CDX1P47902 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 RASA4CP-201ENST00000424092 1398 ntBASIC17.3■□□□□ 0.36
CDX1P47902 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX1P47902 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX1P47902 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX1P47902 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX1P47902 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 BX842568.3-201ENST00000418104 571 ntBASIC17.29■□□□□ 0.36
CDX1P47902 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDX1P47902 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.29■□□□□ 0.36
CDX1P47902 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX1P47902 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDX1P47902 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDX1P47902 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX1P47902 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX1P47902 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDX1P47902 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX1P47902 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 AC233992.3-201ENST00000607491 485 ntBASIC17.28■□□□□ 0.36
CDX1P47902 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CDX1P47902 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX1P47902 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CDX1P47902 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
CDX1P47902 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX1P47902 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX1P47902 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX1P47902 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX1P47902 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX1P47902 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDX1P47902 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CDX1P47902 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX1P47902 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX1P47902 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CDX1P47902 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX1P47902 AC008764.7-201ENST00000593779 1081 ntBASIC17.27■□□□□ 0.36
CDX1P47902 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX1P47902 CA15P2-201ENST00000611168 834 ntBASIC17.27■□□□□ 0.36
CDX1P47902 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.27■□□□□ 0.35
CDX1P47902 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX1P47902 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.27■□□□□ 0.35
CDX1P47902 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CDX1P47902 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDX1P47902 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 AC133637.1-201ENST00000624115 1537 ntBASIC17.26■□□□□ 0.35
CDX1P47902 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms