Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
COL4A5P29400 LINC01960-201ENST00000563759 1884 ntBASIC26.08■■□□□ 1.77
COL4A5P29400 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC26.08■■□□□ 1.77
COL4A5P29400 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC26.08■■□□□ 1.77
COL4A5P29400 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.08■■□□□ 1.77
COL4A5P29400 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.08■■□□□ 1.77
COL4A5P29400 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC26.08■■□□□ 1.77
COL4A5P29400 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC26.08■■□□□ 1.77
COL4A5P29400 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
COL4A5P29400 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
COL4A5P29400 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
COL4A5P29400 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
COL4A5P29400 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL4A5P29400 FXN-202ENST00000396364 980 ntTSL 5 BASIC26.07■■□□□ 1.76
COL4A5P29400 AL512625.2-201ENST00000417533 625 ntBASIC26.07■■□□□ 1.76
COL4A5P29400 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.07■■□□□ 1.76
COL4A5P29400 AP006587.3-201ENST00000525742 1516 ntBASIC26.07■■□□□ 1.76
COL4A5P29400 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
COL4A5P29400 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
COL4A5P29400 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.06■■□□□ 1.76
COL4A5P29400 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.06■■□□□ 1.76
COL4A5P29400 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.06■■□□□ 1.76
COL4A5P29400 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC26.06■■□□□ 1.76
COL4A5P29400 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
COL4A5P29400 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.06■■□□□ 1.76
COL4A5P29400 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC26.06■■□□□ 1.76
COL4A5P29400 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
COL4A5P29400 AC091874.3-201ENST00000512672 1195 ntBASIC26.06■■□□□ 1.76
COL4A5P29400 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL4A5P29400 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.05■■□□□ 1.76
COL4A5P29400 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
COL4A5P29400 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL4A5P29400 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.05■■□□□ 1.76
COL4A5P29400 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL4A5P29400 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL4A5P29400 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL4A5P29400 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.04■■□□□ 1.76
COL4A5P29400 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL4A5P29400 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
COL4A5P29400 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.04■■□□□ 1.76
COL4A5P29400 AC006058.3-201ENST00000606217 1069 ntBASIC26.04■■□□□ 1.76
COL4A5P29400 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL4A5P29400 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL4A5P29400 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL4A5P29400 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL4A5P29400 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.03■■□□□ 1.76
COL4A5P29400 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL4A5P29400 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.03■■□□□ 1.76
COL4A5P29400 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL4A5P29400 LINC00526-201ENST00000581067 1875 ntBASIC26.03■■□□□ 1.76
COL4A5P29400 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL4A5P29400 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.03■■□□□ 1.76
COL4A5P29400 AL158047.1-201ENST00000445918 881 ntBASIC26.03■■□□□ 1.76
COL4A5P29400 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.03■■□□□ 1.76
COL4A5P29400 AC053503.5-201ENST00000601508 636 ntBASIC26.03■■□□□ 1.76
COL4A5P29400 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC26.02■■□□□ 1.76
COL4A5P29400 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
COL4A5P29400 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
COL4A5P29400 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC26.02■■□□□ 1.76
COL4A5P29400 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.02■■□□□ 1.76
COL4A5P29400 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.02■■□□□ 1.76
COL4A5P29400 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.02■■□□□ 1.76
COL4A5P29400 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC26.02■■□□□ 1.76
COL4A5P29400 AC069236.1-201ENST00000604339 616 ntBASIC26.02■■□□□ 1.76
COL4A5P29400 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC26.02■■□□□ 1.76
COL4A5P29400 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC26.02■■□□□ 1.76
COL4A5P29400 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.02■■□□□ 1.76
COL4A5P29400 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL4A5P29400 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.01■■□□□ 1.75
COL4A5P29400 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.01■■□□□ 1.75
COL4A5P29400 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.01■■□□□ 1.75
COL4A5P29400 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
COL4A5P29400 AC128676.1-201ENST00000454392 318 ntBASIC26.01■■□□□ 1.75
COL4A5P29400 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL4A5P29400 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.01■■□□□ 1.75
COL4A5P29400 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26■■□□□ 1.75
COL4A5P29400 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL4A5P29400 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL4A5P29400 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL4A5P29400 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC26■■□□□ 1.75
COL4A5P29400 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26■■□□□ 1.75
COL4A5P29400 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC26■■□□□ 1.75
COL4A5P29400 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms