Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 OR10C1-204ENST00000622521 1039 ntBASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 THRA-202ENST00000394121 2260 ntTSL 2 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
CSB-PGBD3P0DP91 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 AC007322.4-201ENST00000509611 723 ntBASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 PLLP-204ENST00000569059 665 ntTSL 3 BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 AC053503.5-201ENST00000601508 636 ntBASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC28.54■■■□□ 2.16
CSB-PGBD3P0DP91 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 AL034346.1-201ENST00000568244 1277 ntBASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 AC069236.1-201ENST00000604339 616 ntBASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
CSB-PGBD3P0DP91 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 AC092118.2-201ENST00000613495 667 ntBASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 AC092068.2-201ENST00000590491 1708 ntBASIC28.52■■■□□ 2.16
CSB-PGBD3P0DP91 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
CSB-PGBD3P0DP91 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
CSB-PGBD3P0DP91 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.51■■■□□ 2.15
CSB-PGBD3P0DP91 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CSB-PGBD3P0DP91 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC28.51■■■□□ 2.15
CSB-PGBD3P0DP91 LINC00526-201ENST00000581067 1875 ntBASIC28.51■■■□□ 2.15
CSB-PGBD3P0DP91 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 AP006587.3-201ENST00000525742 1516 ntBASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 BX276092.2-201ENST00000417668 665 ntBASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 RARRES2P4-201ENST00000514074 484 ntBASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC28.5■■■□□ 2.15
CSB-PGBD3P0DP91 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CSB-PGBD3P0DP91 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
CSB-PGBD3P0DP91 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms