Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DQB2P05538 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.77■■□□□ 1.07
HLA-DQB2P05538 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DQB2P05538 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DQB2P05538 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DQB2P05538 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DQB2P05538 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 AL358852.1-201ENST00000623174 1268 ntBASIC21.76■■□□□ 1.07
HLA-DQB2P05538 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DQB2P05538 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DQB2P05538 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DQB2P05538 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.73■■□□□ 1.07
HLA-DQB2P05538 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 AC009237.3-201ENST00000393279 1427 ntBASIC21.73■■□□□ 1.07
HLA-DQB2P05538 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.73■■□□□ 1.07
HLA-DQB2P05538 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DQB2P05538 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 AC005224.4-201ENST00000583262 1652 ntBASIC21.72■■□□□ 1.07
HLA-DQB2P05538 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 TPRG1LP1-201ENST00000598702 760 ntBASIC21.72■■□□□ 1.07
HLA-DQB2P05538 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DQB2P05538 AC003102.1-202ENST00000563394 1796 ntBASIC21.71■■□□□ 1.07
HLA-DQB2P05538 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DQB2P05538 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DQB2P05538 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DQB2P05538 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms