Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TNFP01375 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
TNFP01375 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFP01375 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TNFP01375 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFP01375 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TNFP01375 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TNFP01375 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFP01375 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TNFP01375 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.96■□□□□ 0.95
TNFP01375 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
TNFP01375 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TNFP01375 AC010141.2-201ENST00000452426 721 ntBASIC20.95■□□□□ 0.94
TNFP01375 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFP01375 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.95■□□□□ 0.94
TNFP01375 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TNFP01375 KRT18P20-201ENST00000548986 1279 ntBASIC20.95■□□□□ 0.94
TNFP01375 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.95■□□□□ 0.94
TNFP01375 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.95■□□□□ 0.94
TNFP01375 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.95■□□□□ 0.94
TNFP01375 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.94■□□□□ 0.94
TNFP01375 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 AC006970.2-201ENST00000450065 779 ntBASIC20.94■□□□□ 0.94
TNFP01375 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.94■□□□□ 0.94
TNFP01375 MFSD11-216ENST00000590393 1141 ntBASIC20.94■□□□□ 0.94
TNFP01375 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TNFP01375 AC053503.5-201ENST00000601508 636 ntBASIC20.94■□□□□ 0.94
TNFP01375 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.94■□□□□ 0.94
TNFP01375 MYCNOS-205ENST00000641950 531 ntBASIC20.94■□□□□ 0.94
TNFP01375 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.94■□□□□ 0.94
TNFP01375 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFP01375 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.94■□□□□ 0.94
TNFP01375 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFP01375 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TNFP01375 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.93■□□□□ 0.94
TNFP01375 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 HLA-L-209ENST00000420110 1011 ntBASIC20.93■□□□□ 0.94
TNFP01375 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.93■□□□□ 0.94
TNFP01375 EEF1DP3-203ENST00000566025 782 ntBASIC20.93■□□□□ 0.94
TNFP01375 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFP01375 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TNFP01375 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
TNFP01375 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFP01375 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TNFP01375 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TNFP01375 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.92■□□□□ 0.94
TNFP01375 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.92■□□□□ 0.94
TNFP01375 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFP01375 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFP01375 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.91■□□□□ 0.94
TNFP01375 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFP01375 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFP01375 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TNFP01375 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TNFP01375 CROCCP5-201ENST00000436658 830 ntBASIC20.91■□□□□ 0.94
TNFP01375 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TNFP01375 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFP01375 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.91■□□□□ 0.94
TNFP01375 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFP01375 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFP01375 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFP01375 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.91■□□□□ 0.94
TNFP01375 AC231657.2-201ENST00000624556 255 ntBASIC20.91■□□□□ 0.94
TNFP01375 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
TNFP01375 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.9■□□□□ 0.94
TNFP01375 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms