Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC011298.3-201ENST00000615796 283 ntBASIC20.54■□□□□ 0.88
LDLRP01130 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.54■□□□□ 0.88
LDLRP01130 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDLRP01130 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDLRP01130 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.54■□□□□ 0.88
LDLRP01130 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
LDLRP01130 AC005703.6-201ENST00000623265 1329 ntBASIC20.53■□□□□ 0.88
LDLRP01130 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDLRP01130 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDLRP01130 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.53■□□□□ 0.88
LDLRP01130 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.53■□□□□ 0.88
LDLRP01130 AC099791.1-201ENST00000416440 715 ntBASIC20.53■□□□□ 0.88
LDLRP01130 AL137784.2-201ENST00000607332 1000 ntBASIC20.53■□□□□ 0.88
LDLRP01130 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.53■□□□□ 0.88
LDLRP01130 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.53■□□□□ 0.88
LDLRP01130 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.53■□□□□ 0.88
LDLRP01130 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDLRP01130 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
LDLRP01130 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDLRP01130 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LDLRP01130 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDLRP01130 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDLRP01130 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LDLRP01130 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.52■□□□□ 0.88
LDLRP01130 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDLRP01130 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDLRP01130 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.52■□□□□ 0.88
LDLRP01130 AC034268.1-201ENST00000441047 882 ntBASIC20.52■□□□□ 0.88
LDLRP01130 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.52■□□□□ 0.88
LDLRP01130 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.52■□□□□ 0.88
LDLRP01130 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.52■□□□□ 0.88
LDLRP01130 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.52■□□□□ 0.88
LDLRP01130 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.52■□□□□ 0.88
LDLRP01130 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LDLRP01130 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.52■□□□□ 0.88
LDLRP01130 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.52■□□□□ 0.88
LDLRP01130 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LDLRP01130 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LDLRP01130 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
LDLRP01130 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LDLRP01130 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.51■□□□□ 0.87
LDLRP01130 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 AC073130.3-201ENST00000624389 2278 ntBASIC20.51■□□□□ 0.87
LDLRP01130 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.51■□□□□ 0.87
LDLRP01130 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.51■□□□□ 0.87
LDLRP01130 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.51■□□□□ 0.87
LDLRP01130 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.51■□□□□ 0.87
LDLRP01130 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.51■□□□□ 0.87
LDLRP01130 AL138724.1-201ENST00000606771 1088 ntBASIC20.51■□□□□ 0.87
LDLRP01130 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDLRP01130 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDLRP01130 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.5■□□□□ 0.87
LDLRP01130 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.5■□□□□ 0.87
LDLRP01130 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDLRP01130 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDLRP01130 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LDLRP01130 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.5■□□□□ 0.87
LDLRP01130 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.5■□□□□ 0.87
LDLRP01130 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LDLRP01130 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.5■□□□□ 0.87
LDLRP01130 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LDLRP01130 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LDLRP01130 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
LDLRP01130 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.5■□□□□ 0.87
LDLRP01130 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.5■□□□□ 0.87
LDLRP01130 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDLRP01130 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDLRP01130 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDLRP01130 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDLRP01130 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LDLRP01130 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
LDLRP01130 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.49■□□□□ 0.87
LDLRP01130 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.49■□□□□ 0.87
LDLRP01130 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.49■□□□□ 0.87
LDLRP01130 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDLRP01130 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.49■□□□□ 0.87
LDLRP01130 AC144652.1-201ENST00000609974 1624 ntBASIC20.49■□□□□ 0.87
LDLRP01130 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.49■□□□□ 0.87
LDLRP01130 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
LDLRP01130 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.48■□□□□ 0.87
LDLRP01130 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LDLRP01130 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.48■□□□□ 0.87
LDLRP01130 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.48■□□□□ 0.87
LDLRP01130 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LDLRP01130 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms