Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 DET1-205ENST00000558413 583 ntTSL 4 BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 MIR4758-201ENST00000577688 71 ntBASIC37.57■■■■□ 3.6
CCDC88BA6NC98 AC016405.3-201ENST00000607710 860 ntBASIC37.57■■■■□ 3.6
CCDC88BA6NC98 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
CCDC88BA6NC98 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 PRORSD1P-201ENST00000295112 541 ntBASIC37.56■■■■□ 3.6
CCDC88BA6NC98 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 MYC-209ENST00000641252 345 ntBASIC37.56■■■■□ 3.6
CCDC88BA6NC98 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
CCDC88BA6NC98 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 OR10C1-204ENST00000622521 1039 ntBASIC37.55■■■■□ 3.6
CCDC88BA6NC98 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC37.55■■■■□ 3.6
CCDC88BA6NC98 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
CCDC88BA6NC98 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
CCDC88BA6NC98 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
CCDC88BA6NC98 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC37.53■■■■□ 3.6
CCDC88BA6NC98 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 AC098590.1-201ENST00000468126 897 ntBASIC37.52■■■■□ 3.6
CCDC88BA6NC98 RNA5SP413-201ENST00000516373 109 ntBASIC37.52■■■■□ 3.6
CCDC88BA6NC98 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 BET1L-204ENST00000410108 637 ntTSL 3 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC37.52■■■■□ 3.6
CCDC88BA6NC98 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC37.51■■■■□ 3.6
CCDC88BA6NC98 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC37.51■■■■□ 3.6
CCDC88BA6NC98 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC37.51■■■■□ 3.6
CCDC88BA6NC98 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC37.51■■■■□ 3.59
CCDC88BA6NC98 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC37.5■■■■□ 3.59
CCDC88BA6NC98 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC37.49■■■■□ 3.59
CCDC88BA6NC98 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC37.48■■■■□ 3.59
CCDC88BA6NC98 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
CCDC88BA6NC98 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC37.48■■■■□ 3.59
CCDC88BA6NC98 AL512625.2-201ENST00000417533 625 ntBASIC37.48■■■■□ 3.59
CCDC88BA6NC98 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC37.48■■■■□ 3.59
CCDC88BA6NC98 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
CCDC88BA6NC98 RARRES2P4-201ENST00000514074 484 ntBASIC37.47■■■■□ 3.59
CCDC88BA6NC98 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC37.47■■■■□ 3.59
CCDC88BA6NC98 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC37.46■■■■□ 3.59
CCDC88BA6NC98 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC37.46■■■■□ 3.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms