Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 HES4-202ENST00000428771 1040 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 AFG3L1P-217ENST00000557444 2447 ntBASIC16.75■□□□□ 0.27
TRAV1-1A0A0B4J248 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 AC073314.1-201ENST00000568729 2216 ntBASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 AF131216.4-201ENST00000638924 1588 ntBASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 DUX4L4-201ENST00000566884 1269 ntBASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 AL020996.1-203ENST00000536896 2307 ntBASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV1-1A0A0B4J248 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 AC022616.5-201ENST00000518796 181 ntBASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 SRP68-213ENST00000629930 165 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV1-1A0A0B4J248 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 AC026471.6-201ENST00000622954 1905 ntBASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.72■□□□□ 0.27
TRAV1-1A0A0B4J248 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms