Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 OR2I1P-207ENST00000453522 948 ntBASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC011298.3-201ENST00000615796 283 ntBASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC28.79■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 DUX4L19-201ENST00000557448 1267 ntBASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC010542.4-201ENST00000563151 1910 ntBASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 RASA4CP-201ENST00000424092 1398 ntBASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SF1-220ENST00000626028 704 ntTSL 2 BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FAM99A-202ENST00000538190 1989 ntBASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AL138724.1-201ENST00000606771 1088 ntBASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC099791.1-201ENST00000416440 715 ntBASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms