Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 AC233992.3-201ENST00000607491 485 ntBASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 AC110285.6-201ENST00000617652 491 ntBASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DRB4X5D2U9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 EDA-201ENST00000338901 1233 ntBASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 AC079089.2-201ENST00000531211 1277 ntBASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 AC092053.2-201ENST00000640557 1818 ntBASIC16.1■□□□□ 0.17
HLA-DRB4X5D2U9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AC027682.1-201ENST00000562846 899 ntBASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 AL139246.5-201ENST00000606645 996 ntBASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DRB4X5D2U9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.08■□□□□ 0.17
HLA-DRB4X5D2U9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 GRAMD4P4-201ENST00000613563 1115 ntBASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 OXCT2P1-201ENST00000447263 1535 ntBASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DRB4X5D2U9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 AC126544.1-201ENST00000580842 1059 ntBASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 AL355001.2-201ENST00000620617 1191 ntBASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DRB4X5D2U9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms