Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 AC068338.2-201ENST00000563278 1430 ntBASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 CYP2T1P-201ENST00000432607 1285 ntBASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 RNA5SP413-201ENST00000516373 109 ntBASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHGA1Q9Y5H4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AL512625.2-201ENST00000417533 625 ntBASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AC079089.2-201ENST00000531211 1277 ntBASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AC092118.2-201ENST00000613495 667 ntBASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
PCDHGA1Q9Y5H4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 DUSP8P5-201ENST00000422884 1815 ntBASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHGA1Q9Y5H4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 AC008694.1-202ENST00000636953 945 ntBASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHGA1Q9Y5H4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 PRORSD1P-201ENST00000295112 541 ntBASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 AL034346.1-201ENST00000568244 1277 ntBASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 AC069236.1-201ENST00000604339 616 ntBASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHGA1Q9Y5H4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDHGA1Q9Y5H4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDHGA1Q9Y5H4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.64■□□□□ 0.9
PCDHGA1Q9Y5H4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 EEF1DP3-203ENST00000566025 782 ntBASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 AC004812.2-201ENST00000611079 2094 ntBASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHGA1Q9Y5H4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms