Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.91■□□□□ 0.78
USE1Q9NZ43 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 AC139795.1-202ENST00000500444 432 ntBASIC19.9■□□□□ 0.78
USE1Q9NZ43 NTF6A-201ENST00000591175 560 ntBASIC19.9■□□□□ 0.78
USE1Q9NZ43 U85056.1-201ENST00000616429 682 ntBASIC19.9■□□□□ 0.78
USE1Q9NZ43 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USE1Q9NZ43 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USE1Q9NZ43 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 AC004687.1-201ENST00000579003 1625 ntBASIC19.89■□□□□ 0.77
USE1Q9NZ43 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.89■□□□□ 0.77
USE1Q9NZ43 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.89■□□□□ 0.77
USE1Q9NZ43 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USE1Q9NZ43 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USE1Q9NZ43 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USE1Q9NZ43 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.89■□□□□ 0.77
USE1Q9NZ43 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USE1Q9NZ43 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.88■□□□□ 0.77
USE1Q9NZ43 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USE1Q9NZ43 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USE1Q9NZ43 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.86■□□□□ 0.77
USE1Q9NZ43 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 LINC01006-201ENST00000333319 2292 ntBASIC19.86■□□□□ 0.77
USE1Q9NZ43 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
USE1Q9NZ43 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.86■□□□□ 0.77
USE1Q9NZ43 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.86■□□□□ 0.77
USE1Q9NZ43 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.86■□□□□ 0.77
USE1Q9NZ43 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USE1Q9NZ43 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.85■□□□□ 0.77
USE1Q9NZ43 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
USE1Q9NZ43 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.85■□□□□ 0.77
USE1Q9NZ43 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USE1Q9NZ43 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms