Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 AC010997.5-201ENST00000609182 354 ntBASIC19.5■□□□□ 0.71
DDX28Q9NUL7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DDX28Q9NUL7 LINC01529-204ENST00000636474 1715 ntBASIC19.48■□□□□ 0.71
DDX28Q9NUL7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
DDX28Q9NUL7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 TSPY9P-201ENST00000440215 945 ntBASIC19.47■□□□□ 0.71
DDX28Q9NUL7 TSPY11P-201ENST00000442607 1045 ntBASIC19.47■□□□□ 0.71
DDX28Q9NUL7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DDX28Q9NUL7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
DDX28Q9NUL7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.7
DDX28Q9NUL7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 AC009102.2-201ENST00000606772 1639 ntBASIC19.45■□□□□ 0.7
DDX28Q9NUL7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 ESRRAP2-201ENST00000418437 1549 ntBASIC19.45■□□□□ 0.7
DDX28Q9NUL7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.45■□□□□ 0.7
DDX28Q9NUL7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms