Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNFT1Q5M7Z0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.41■□□□□ 0.7
RNFT1Q5M7Z0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RNFT1Q5M7Z0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.41■□□□□ 0.7
RNFT1Q5M7Z0 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 NCF1B-203ENST00000435988 1254 ntBASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 DUX4L16-201ENST00000555130 1264 ntBASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNFT1Q5M7Z0 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.39■□□□□ 0.7
RNFT1Q5M7Z0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.39■□□□□ 0.69
RNFT1Q5M7Z0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 AL109923.1-201ENST00000618799 583 ntBASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 AL050303.2-201ENST00000619798 666 ntBASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 MYCNOS-205ENST00000641950 531 ntBASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNFT1Q5M7Z0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 AP006587.3-201ENST00000525742 1516 ntBASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 AC010141.2-201ENST00000452426 721 ntBASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNFT1Q5M7Z0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 AL034346.1-201ENST00000568244 1277 ntBASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 AC138907.5-202ENST00000569484 235 ntBASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.36■□□□□ 0.69
RNFT1Q5M7Z0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNFT1Q5M7Z0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms