Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.58■■□□□ 1.37
CCDC40Q4G0X9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC40Q4G0X9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC40Q4G0X9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.36
CCDC40Q4G0X9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 AP005435.1-201ENST00000529293 1178 ntBASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 MIR4767-201ENST00000582827 78 ntBASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC40Q4G0X9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 AC008406.3-201ENST00000620001 1374 ntBASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CCDC40Q4G0X9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 AL136162.1-201ENST00000607711 1078 ntBASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC40Q4G0X9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 AC024257.2-201ENST00000549699 147 ntBASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CCDC40Q4G0X9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 AC026471.6-201ENST00000622954 1905 ntBASIC23.53■■□□□ 1.36
CCDC40Q4G0X9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.52■■□□□ 1.36
CCDC40Q4G0X9 BX842568.3-201ENST00000418104 571 ntBASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms