Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRRK1Q38SD2 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.33■■□□□ 1.01
LRRK1Q38SD2 AC079140.4-201ENST00000507448 529 ntBASIC21.33■■□□□ 1.01
LRRK1Q38SD2 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
LRRK1Q38SD2 UBE2DNL-204ENST00000602536 740 ntBASIC21.33■■□□□ 1.01
LRRK1Q38SD2 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRRK1Q38SD2 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LRRK1Q38SD2 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LRRK1Q38SD2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRRK1Q38SD2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRRK1Q38SD2 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRRK1Q38SD2 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.33■■□□□ 1
LRRK1Q38SD2 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRRK1Q38SD2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.33■■□□□ 1
LRRK1Q38SD2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.32■■□□□ 1
LRRK1Q38SD2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.32■■□□□ 1
LRRK1Q38SD2 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
LRRK1Q38SD2 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.32■■□□□ 1
LRRK1Q38SD2 RARRES2P11-201ENST00000635158 484 ntBASIC21.32■■□□□ 1
LRRK1Q38SD2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRK1Q38SD2 LINC02228-203ENST00000641970 1355 ntBASIC21.32■■□□□ 1
LRRK1Q38SD2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRRK1Q38SD2 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRRK1Q38SD2 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.31■■□□□ 1
LRRK1Q38SD2 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.31■■□□□ 1
LRRK1Q38SD2 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.31■■□□□ 1
LRRK1Q38SD2 FAM99A-202ENST00000538190 1989 ntBASIC21.31■■□□□ 1
LRRK1Q38SD2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRRK1Q38SD2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRRK1Q38SD2 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
LRRK1Q38SD2 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
LRRK1Q38SD2 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.31■■□□□ 1
LRRK1Q38SD2 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
LRRK1Q38SD2 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.3■■□□□ 1
LRRK1Q38SD2 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.3■■□□□ 1
LRRK1Q38SD2 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
LRRK1Q38SD2 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.3■■□□□ 1
LRRK1Q38SD2 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.3■■□□□ 1
LRRK1Q38SD2 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.3■■□□□ 1
LRRK1Q38SD2 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
LRRK1Q38SD2 EEF1DP3-203ENST00000566025 782 ntBASIC21.3■■□□□ 1
LRRK1Q38SD2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.3■■□□□ 1
LRRK1Q38SD2 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LRRK1Q38SD2 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.3■■□□□ 1
LRRK1Q38SD2 AC026471.6-201ENST00000622954 1905 ntBASIC21.3■■□□□ 1
LRRK1Q38SD2 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRRK1Q38SD2 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.3■■□□□ 1
LRRK1Q38SD2 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.3■■□□□ 1
LRRK1Q38SD2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.29■■□□□ 1
LRRK1Q38SD2 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
LRRK1Q38SD2 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.29■■□□□ 1
LRRK1Q38SD2 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.29■■□□□ 1
LRRK1Q38SD2 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.29■■□□□ 1
LRRK1Q38SD2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 AC233723.2-201ENST00000623798 2106 ntBASIC21.29■■□□□ 1
LRRK1Q38SD2 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRK1Q38SD2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LRRK1Q38SD2 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.28■■□□□ 1
LRRK1Q38SD2 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.28■■□□□ 1
LRRK1Q38SD2 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 AC006015.1-201ENST00000429970 570 ntBASIC21.28■■□□□ 1
LRRK1Q38SD2 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.28■■□□□ 1
LRRK1Q38SD2 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.28■■□□□ 1
LRRK1Q38SD2 AC138907.5-202ENST00000569484 235 ntBASIC21.28■■□□□ 1
LRRK1Q38SD2 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.28■■□□□ 1
LRRK1Q38SD2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.28■■□□□ 1
LRRK1Q38SD2 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.28■■□□□ 1
LRRK1Q38SD2 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRK1Q38SD2 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.28■■□□□ 1
LRRK1Q38SD2 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
LRRK1Q38SD2 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
LRRK1Q38SD2 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms