Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.32■□□□□ 0.68
LSM3P62310 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.32■□□□□ 0.68
LSM3P62310 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
LSM3P62310 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.32■□□□□ 0.68
LSM3P62310 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.32■□□□□ 0.68
LSM3P62310 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
LSM3P62310 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
LSM3P62310 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LSM3P62310 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.32■□□□□ 0.68
LSM3P62310 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM3P62310 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.31■□□□□ 0.68
LSM3P62310 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.31■□□□□ 0.68
LSM3P62310 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.31■□□□□ 0.68
LSM3P62310 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LSM3P62310 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
LSM3P62310 AC087289.5-201ENST00000586076 3175 ntBASIC19.31■□□□□ 0.68
LSM3P62310 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM3P62310 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.31■□□□□ 0.68
LSM3P62310 AFG3L1P-217ENST00000557444 2447 ntBASIC19.31■□□□□ 0.68
LSM3P62310 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LSM3P62310 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM3P62310 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.3■□□□□ 0.68
LSM3P62310 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM3P62310 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM3P62310 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LSM3P62310 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM3P62310 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM3P62310 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM3P62310 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
LSM3P62310 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 RPS2P35-201ENST00000443417 897 ntBASIC19.29■□□□□ 0.68
LSM3P62310 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.29■□□□□ 0.68
LSM3P62310 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM3P62310 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LSM3P62310 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LSM3P62310 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.68
LSM3P62310 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.28■□□□□ 0.68
LSM3P62310 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.28■□□□□ 0.68
LSM3P62310 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.28■□□□□ 0.68
LSM3P62310 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.28■□□□□ 0.68
LSM3P62310 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM3P62310 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM3P62310 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM3P62310 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM3P62310 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
LSM3P62310 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.27■□□□□ 0.67
LSM3P62310 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
LSM3P62310 AC009831.1-201ENST00000580420 1582 ntBASIC19.27■□□□□ 0.67
LSM3P62310 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms