Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AC087742.1-201ENST00000575880 1738 ntBASIC21.16■□□□□ 0.98
SRP54P61011 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 ESRRAP2-201ENST00000418437 1549 ntBASIC21.16■□□□□ 0.98
SRP54P61011 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.16■□□□□ 0.98
SRP54P61011 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 AC055733.4-201ENST00000638462 1354 ntBASIC21.16■□□□□ 0.98
SRP54P61011 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.16■□□□□ 0.98
SRP54P61011 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SRP54P61011 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.15■□□□□ 0.98
SRP54P61011 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.15■□□□□ 0.98
SRP54P61011 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SRP54P61011 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SRP54P61011 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
SRP54P61011 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.98
SRP54P61011 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SRP54P61011 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SRP54P61011 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SRP54P61011 AL034346.1-201ENST00000568244 1277 ntBASIC21.14■□□□□ 0.97
SRP54P61011 AC104187.1-201ENST00000607510 612 ntBASIC21.14■□□□□ 0.97
SRP54P61011 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SRP54P61011 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.14■□□□□ 0.97
SRP54P61011 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SRP54P61011 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.13■□□□□ 0.97
SRP54P61011 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SRP54P61011 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.13■□□□□ 0.97
SRP54P61011 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.13■□□□□ 0.97
SRP54P61011 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 AC137767.1-201ENST00000602918 1920 ntBASIC21.13■□□□□ 0.97
SRP54P61011 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SRP54P61011 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.12■□□□□ 0.97
SRP54P61011 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SRP54P61011 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SRP54P61011 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.12■□□□□ 0.97
SRP54P61011 BID-214ENST00000617586 542 ntTSL 5 BASIC21.12■□□□□ 0.97
SRP54P61011 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.12■□□□□ 0.97
SRP54P61011 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
SRP54P61011 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.12■□□□□ 0.97
SRP54P61011 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SRP54P61011 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 KRT18P11-201ENST00000435214 1283 ntBASIC21.11■□□□□ 0.97
SRP54P61011 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.11■□□□□ 0.97
SRP54P61011 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.11■□□□□ 0.97
SRP54P61011 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SRP54P61011 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SRP54P61011 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.1■□□□□ 0.97
SRP54P61011 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SRP54P61011 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.1■□□□□ 0.97
SRP54P61011 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SRP54P61011 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.1■□□□□ 0.97
SRP54P61011 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SRP54P61011 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SRP54P61011 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SRP54P61011 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms