Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL1P09341 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL1P09341 AC087393.1-201ENST00000582896 145 ntBASIC16.61■□□□□ 0.25
CXCL1P09341 AC018755.3-202ENST00000596210 929 ntBASIC16.61■□□□□ 0.25
CXCL1P09341 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CXCL1P09341 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL1P09341 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.6■□□□□ 0.25
CXCL1P09341 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL1P09341 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 LETM1P2-201ENST00000597330 2178 ntBASIC16.6■□□□□ 0.25
CXCL1P09341 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.6■□□□□ 0.25
CXCL1P09341 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.6■□□□□ 0.25
CXCL1P09341 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CXCL1P09341 AC011551.1-201ENST00000614101 683 ntBASIC16.6■□□□□ 0.25
CXCL1P09341 AC133552.2-201ENST00000619106 1032 ntBASIC16.6■□□□□ 0.25
CXCL1P09341 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CXCL1P09341 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL1P09341 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CXCL1P09341 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.59■□□□□ 0.25
CXCL1P09341 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL1P09341 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CXCL1P09341 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL1P09341 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 IDNK-203ENST00000405990 629 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL1P09341 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL1P09341 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL1P09341 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL1P09341 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.58■□□□□ 0.25
CXCL1P09341 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.58■□□□□ 0.25
CXCL1P09341 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.58■□□□□ 0.25
CXCL1P09341 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL1P09341 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CXCL1P09341 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL1P09341 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.58■□□□□ 0.24
CXCL1P09341 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.58■□□□□ 0.24
CXCL1P09341 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.57■□□□□ 0.24
CXCL1P09341 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 AC018445.3-201ENST00000624177 1945 ntBASIC16.57■□□□□ 0.24
CXCL1P09341 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CXCL1P09341 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CXCL1P09341 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CXCL1P09341 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CXCL1P09341 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CXCL1P09341 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL1P09341 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms