Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK3AO75631 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
UPK3AO75631 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK3AO75631 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK3AO75631 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.23■□□□□ 0.67
UPK3AO75631 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.23■□□□□ 0.67
UPK3AO75631 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.23■□□□□ 0.67
UPK3AO75631 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3AO75631 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK3AO75631 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
UPK3AO75631 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK3AO75631 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK3AO75631 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
UPK3AO75631 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UPK3AO75631 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK3AO75631 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK3AO75631 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UPK3AO75631 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
UPK3AO75631 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.22■□□□□ 0.67
UPK3AO75631 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK3AO75631 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
UPK3AO75631 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK3AO75631 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK3AO75631 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK3AO75631 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 OXCT2P1-201ENST00000447263 1535 ntBASIC19.21■□□□□ 0.67
UPK3AO75631 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
UPK3AO75631 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK3AO75631 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.21■□□□□ 0.67
UPK3AO75631 AC079089.2-201ENST00000531211 1277 ntBASIC19.21■□□□□ 0.67
UPK3AO75631 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK3AO75631 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
UPK3AO75631 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.21■□□□□ 0.67
UPK3AO75631 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK3AO75631 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK3AO75631 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3AO75631 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
UPK3AO75631 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.2■□□□□ 0.66
UPK3AO75631 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 AC105265.2-201ENST00000467189 838 ntBASIC19.2■□□□□ 0.66
UPK3AO75631 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.2■□□□□ 0.66
UPK3AO75631 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK3AO75631 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.2■□□□□ 0.66
UPK3AO75631 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
UPK3AO75631 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
UPK3AO75631 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK3AO75631 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK3AO75631 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.19■□□□□ 0.66
UPK3AO75631 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3AO75631 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK3AO75631 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.18■□□□□ 0.66
UPK3AO75631 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.18■□□□□ 0.66
UPK3AO75631 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.18■□□□□ 0.66
UPK3AO75631 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.18■□□□□ 0.66
UPK3AO75631 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.18■□□□□ 0.66
UPK3AO75631 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.18■□□□□ 0.66
UPK3AO75631 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3AO75631 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK3AO75631 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK3AO75631 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
UPK3AO75631 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.17■□□□□ 0.66
UPK3AO75631 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK3AO75631 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK3AO75631 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms