Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.312e-6■■■■■ 172.3
SF3B1O75533 PHF20L1-204ENST00000361997 3237 ntTSL 513.11□□□□□ -0.311e-7■■■■■ 172.3
SF3B1O75533 KRBA1-209ENST00000621069 3449 ntTSL 1 (best)13.11□□□□□ -0.311e-7■■■■■ 172.3
SF3B1O75533 AP001107.8-201ENST00000530805 479 ntTSL 3 BASIC13.1□□□□□ -0.311e-7■■■■■ 172.3
SF3B1O75533 CASD1-203ENST00000443644 641 ntTSL 513.05□□□□□ -0.321e-7■■■■■ 172.3
SF3B1O75533 GP6-203ENST00000417454 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.322e-6■■■■■ 172.3
SF3B1O75533 RAD51C-207ENST00000475762 2077 ntTSL 213.03□□□□□ -0.321e-7■■■■■ 172.3
SF3B1O75533 SPIDR-209ENST00000519141 1699 ntTSL 213.02□□□□□ -0.332e-6■■■■■ 172.3
SF3B1O75533 CCNB1IP1-206ENST00000437553 1686 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.334e-21■■■■■ 172.3
SF3B1O75533 MAP7-208ENST00000617204 4536 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.331e-7■■■■■ 172.3
SF3B1O75533 MIEF1-205ENST00000433117 3838 ntTSL 1 (best)12.95□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 ANKMY1-201ENST00000272972 3228 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 RPS6KA3-204ENST00000474266 930 ntTSL 312.94□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 KCNJ15-217ENST00000549805 740 ntTSL 312.93□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 RAD18-210ENST00000495087 593 ntTSL 412.93□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 TAF1C-201ENST00000341690 3678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 ARID1B-227ENST00000637568 4610 ntTSL 512.92□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 PXK-208ENST00000477308 1610 ntTSL 1 (best)12.91□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 UQCC2-203ENST00000606961 4365 nt12.91□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 RAD51C-201ENST00000337432 2591 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.341e-7■■■■■ 172.3
SF3B1O75533 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 YIPF1-202ENST00000371399 1503 ntTSL 2 BASIC12.88□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 DNMBP-201ENST00000324109 6400 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 PLGRKT-204ENST00000482696 592 ntTSL 312.87□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 HSPG2-206ENST00000439717 637 ntTSL 212.85□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 PARG-207ENST00000616448 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 PLEKHM1-204ENST00000579197 4995 ntTSL 212.84□□□□□ -0.352e-6■■■■■ 172.3
SF3B1O75533 PLAGL1-209ENST00000444202 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 MICAL1-206ENST00000465904 4381 ntTSL 212.84□□□□□ -0.351e-7■■■■■ 172.3
SF3B1O75533 TNRC6C-207ENST00000588847 8527 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.361e-7■■■■■ 172.3
SF3B1O75533 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.361e-7■■■■■ 172.3
SF3B1O75533 SPIDR-210ENST00000519362 1807 ntTSL 212.81□□□□□ -0.362e-6■■■■■ 172.3
SF3B1O75533 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC12.78□□□□□ -0.361e-7■■■■■ 172.3
SF3B1O75533 TRAPPC9-203ENST00000517667 518 ntTSL 312.77□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 ST3GAL5-252ENST00000640314 2129 ntTSL 512.76□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 ZC3H10-201ENST00000257940 7228 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC12.75□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 ARFGAP2-225ENST00000532438 740 ntTSL 412.72□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 PIMREG-209ENST00000576056 833 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.371e-7■■■■■ 172.3
SF3B1O75533 SPINT1-203ENST00000563135 937 ntTSL 212.67□□□□□ -0.381e-7■■■■■ 172.3
SF3B1O75533 SERPINH1-202ENST00000524558 3391 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.382e-14■■■■■ 172.3
SF3B1O75533 ARID1B-223ENST00000637015 5284 ntAPPRIS ALT2 TSL 512.67□□□□□ -0.381e-7■■■■■ 172.3
SF3B1O75533 DDX60L-203ENST00000504793 549 ntTSL 512.63□□□□□ -0.391e-7■■■■■ 172.3
SF3B1O75533 ZNF649-205ENST00000599530 730 ntTSL 312.61□□□□□ -0.391e-7■■■■■ 172.3
SF3B1O75533 PLEKHM1-201ENST00000430334 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.392e-6■■■■■ 172.3
SF3B1O75533 SDE2-201ENST00000272091 3975 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.391e-7■■■■■ 172.3
SF3B1O75533 CARD8-226ENST00000522889 567 ntTSL 312.59□□□□□ -0.391e-7■■■■■ 172.3
SF3B1O75533 KRBA1-201ENST00000319551 4020 ntTSL 1 (best) BASIC12.59□□□□□ -0.391e-7■■■■■ 172.3
SF3B1O75533 PPP6C-202ENST00000415905 4172 ntTSL 2 BASIC12.56□□□□□ -0.41e-7■■■■■ 172.3
SF3B1O75533 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.41e-7■■■■■ 172.3
SF3B1O75533 MIEF1-201ENST00000325301 5625 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.41e-7■■■■■ 172.3
SF3B1O75533 WDR37-201ENST00000263150 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.41e-7■■■■■ 172.3
SF3B1O75533 FBXO24-205ENST00000466053 579 ntTSL 412.52□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 VMP1-211ENST00000591315 800 ntTSL 312.51□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 TNRC6C-211ENST00000636222 7093 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 DOCK10-201ENST00000258390 7260 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 UMPS-201ENST00000232607 6738 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 KANTR-202ENST00000603385 4343 ntTSL 412.46□□□□□ -0.411e-7■■■■■ 172.3
SF3B1O75533 ATM-222ENST00000533733 1731 ntTSL 1 (best)12.44□□□□□ -0.421e-7■■■■■ 172.3
SF3B1O75533 MROH7-TTC4-202ENST00000425300 6090 ntAPPRIS ALT2 TSL 212.43□□□□□ -0.421e-7■■■■■ 172.3
SF3B1O75533 ACAD10-217ENST00000515283 703 ntTSL 312.42□□□□□ -0.421e-7■■■■■ 172.3
SF3B1O75533 NME1-201ENST00000013034 796 ntTSL 3 BASIC12.41□□□□□ -0.425e-8■■■■■ 172.3
SF3B1O75533 KCNAB2-201ENST00000164247 4273 ntAPPRIS P4 TSL 2 BASIC12.41□□□□□ -0.421e-7■■■■■ 172.3
SF3B1O75533 TEP1-206ENST00000555727 7832 ntTSL 1 (best)12.39□□□□□ -0.431e-7■■■■■ 172.3
SF3B1O75533 ABCD1-201ENST00000218104 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.432e-14■■■■■ 172.3
SF3B1O75533 POLG-212ENST00000533857 567 ntTSL 412.37□□□□□ -0.431e-7■■■■■ 172.3
SF3B1O75533 LMCD1-AS1-201ENST00000420095 2144 ntTSL 2 BASIC12.36□□□□□ -0.431e-7■■■■■ 172.3
SF3B1O75533 TARS2-213ENST00000483046 311 ntTSL 312.34□□□□□ -0.431e-7■■■■■ 172.3
SF3B1O75533 KCNAB2-204ENST00000378083 4142 ntTSL 2 BASIC12.33□□□□□ -0.431e-7■■■■■ 172.3
SF3B1O75533 PIP4K2C-203ENST00000540759 2876 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.441e-7■■■■■ 172.3
SF3B1O75533 TAF1C-218ENST00000567759 3879 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.441e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-204ENST00000426476 662 ntTSL 312.3□□□□□ -0.441e-7■■■■■ 172.3
SF3B1O75533 SPIDR-203ENST00000517693 1848 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.442e-6■■■■■ 172.3
SF3B1O75533 CARD8-221ENST00000521613 1903 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.441e-7■■■■■ 172.3
SF3B1O75533 TNRC6C-201ENST00000301624 9632 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.441e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-220ENST00000629195 723 ntTSL 1 (best)12.27□□□□□ -0.451e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-205ENST00000442697 6075 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.451e-7■■■■■ 172.3
SF3B1O75533 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-6■■■■■ 172.3
SF3B1O75533 GABBR1-203ENST00000377012 4104 ntTSL 1 (best) BASIC12.22□□□□□ -0.451e-7■■■■■ 172.3
SF3B1O75533 TEP1-205ENST00000555008 6697 ntTSL 1 (best)12.2□□□□□ -0.461e-7■■■■■ 172.3
SF3B1O75533 HEMK1-205ENST00000448997 5757 ntTSL 212.19□□□□□ -0.461e-7■■■■■ 172.3
SF3B1O75533 EIF3D-209ENST00000462641 887 ntTSL 212.17□□□□□ -0.461e-7■■■■■ 172.3
SF3B1O75533 LINC02267-201ENST00000513393 1687 ntTSL 3 BASIC12.16□□□□□ -0.461e-7■■■■■ 172.3
SF3B1O75533 GABBR1-217ENST00000489839 407 ntTSL 312.14□□□□□ -0.471e-7■■■■■ 172.3
SF3B1O75533 SLC25A26-205ENST00000483224 1840 ntTSL 512.12□□□□□ -0.471e-7■■■■■ 172.3
SF3B1O75533 GABBR1-201ENST00000355973 3506 ntTSL 2 BASIC12.08□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 CARD8-207ENST00000518596 1047 ntTSL 212.08□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 TAF1C-203ENST00000541676 3502 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 ZNF761-204ENST00000610928 938 ntTSL 1 (best) BASIC12.07□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 KRBA1-203ENST00000485033 3434 ntTSL 5 BASIC12.06□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 MICAL1-205ENST00000456101 4112 ntTSL 212.06□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 SIDT2-214ENST00000530948 568 ntTSL 512.05□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 TRAP1-216ENST00000576335 645 ntTSL 512.05□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 CARD8-215ENST00000520015 1931 ntTSL 2 BASIC12.04□□□□□ -0.481e-7■■■■■ 172.3
SF3B1O75533 PPP1R32-202ENST00000366212 488 ntTSL 2 BASIC12.02□□□□□ -0.491e-7■■■■■ 172.3
SF3B1O75533 PAPSS1-201ENST00000265174 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.491e-7■■■■■ 172.3
SF3B1O75533 VMP1-207ENST00000588131 587 ntTSL 212□□□□□ -0.491e-7■■■■■ 172.3
SF3B1O75533 ANKRD18CP-201ENST00000354752 2980 ntBASIC12□□□□□ -0.491e-7■■■■■ 172.3
SF3B1O75533 CARD8-212ENST00000519646 2587 ntTSL 511.99□□□□□ -0.491e-7■■■■■ 172.3
SF3B1O75533 SLC25A14-203ENST00000361980 969 ntTSL 1 (best) BASIC11.99□□□□□ -0.491e-7■■■■■ 172.3
Retrieved 100 of 46,956 protein–RNA pairs in 1832.1 ms