Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP4O75161 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP4O75161 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC30.74■■■□□ 2.51
NPHP4O75161 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC30.73■■■□□ 2.51
NPHP4O75161 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC30.73■■■□□ 2.51
NPHP4O75161 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP4O75161 GXYLT1P3-201ENST00000453058 1193 ntBASIC30.73■■■□□ 2.51
NPHP4O75161 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.73■■■□□ 2.51
NPHP4O75161 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC30.73■■■□□ 2.51
NPHP4O75161 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC30.73■■■□□ 2.51
NPHP4O75161 EEF1DP3-203ENST00000566025 782 ntBASIC30.73■■■□□ 2.51
NPHP4O75161 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC30.72■■■□□ 2.51
NPHP4O75161 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC30.72■■■□□ 2.51
NPHP4O75161 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP4O75161 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP4O75161 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP4O75161 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC30.72■■■□□ 2.51
NPHP4O75161 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC30.72■■■□□ 2.51
NPHP4O75161 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP4O75161 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC30.71■■■□□ 2.51
NPHP4O75161 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC30.71■■■□□ 2.51
NPHP4O75161 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC30.71■■■□□ 2.51
NPHP4O75161 AC010980.2-201ENST00000587099 1412 ntBASIC30.71■■■□□ 2.51
NPHP4O75161 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP4O75161 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP4O75161 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
NPHP4O75161 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
NPHP4O75161 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC30.7■■■□□ 2.51
NPHP4O75161 MIR718-201ENST00000390190 70 ntBASIC30.7■■■□□ 2.5
NPHP4O75161 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC30.7■■■□□ 2.5
NPHP4O75161 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC30.7■■■□□ 2.5
NPHP4O75161 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC30.69■■■□□ 2.5
NPHP4O75161 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP4O75161 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
NPHP4O75161 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.68■■■□□ 2.5
NPHP4O75161 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP4O75161 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
NPHP4O75161 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC30.68■■■□□ 2.5
NPHP4O75161 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP4O75161 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
NPHP4O75161 AC022211.4-201ENST00000625094 2161 ntBASIC30.68■■■□□ 2.5
NPHP4O75161 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP4O75161 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP4O75161 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP4O75161 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
NPHP4O75161 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC30.67■■■□□ 2.5
NPHP4O75161 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP4O75161 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP4O75161 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP4O75161 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC30.67■■■□□ 2.5
NPHP4O75161 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP4O75161 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP4O75161 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP4O75161 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC30.66■■■□□ 2.5
NPHP4O75161 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC30.66■■■□□ 2.5
NPHP4O75161 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC30.66■■■□□ 2.5
NPHP4O75161 LINC00543-201ENST00000567234 1845 ntBASIC30.66■■■□□ 2.5
NPHP4O75161 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP4O75161 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP4O75161 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP4O75161 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP4O75161 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP4O75161 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP4O75161 OR2A1-AS1-201ENST00000462305 773 ntBASIC30.65■■■□□ 2.5
NPHP4O75161 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC30.65■■■□□ 2.5
NPHP4O75161 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP4O75161 AC008403.3-201ENST00000598924 454 ntBASIC30.65■■■□□ 2.5
NPHP4O75161 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC30.65■■■□□ 2.5
NPHP4O75161 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP4O75161 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP4O75161 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC30.64■■■□□ 2.5
NPHP4O75161 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.64■■■□□ 2.5
NPHP4O75161 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC30.64■■■□□ 2.5
NPHP4O75161 RNF121-214ENST00000533380 870 ntTSL 3 BASIC30.64■■■□□ 2.5
NPHP4O75161 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC30.64■■■□□ 2.5
NPHP4O75161 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP4O75161 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC30.64■■■□□ 2.5
NPHP4O75161 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP4O75161 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
NPHP4O75161 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP4O75161 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC30.64■■■□□ 2.5
NPHP4O75161 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms